miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26698 3' -54.5 NC_005808.1 + 4488 0.68 0.527557
Target:  5'- cGACGAAACCgccggaUGCGCGCgGCGCc---- -3'
miRNA:   3'- -CUGCUUUGG------GCGUGCGaCGCGcuuag -5'
26698 3' -54.5 NC_005808.1 + 32288 0.68 0.527557
Target:  5'- --gGAAAacaCCaGCGCGUUGCGCGAccucAUCg -3'
miRNA:   3'- cugCUUUg--GG-CGUGCGACGCGCU----UAG- -5'
26698 3' -54.5 NC_005808.1 + 33638 0.68 0.537405
Target:  5'- uGGCGAAuCCgGCAcggccacCGCUG-GCGAAUCc -3'
miRNA:   3'- -CUGCUUuGGgCGU-------GCGACgCGCUUAG- -5'
26698 3' -54.5 NC_005808.1 + 26031 0.68 0.538503
Target:  5'- cGGCGAuggcaucaaAGCCCGCGCGgCggGCGCGc--- -3'
miRNA:   3'- -CUGCU---------UUGGGCGUGC-Ga-CGCGCuuag -5'
26698 3' -54.5 NC_005808.1 + 21214 0.68 0.560617
Target:  5'- cGCGcAGGCCCaGCGCGCcauUGCGaCGAAcUCg -3'
miRNA:   3'- cUGC-UUUGGG-CGUGCG---ACGC-GCUU-AG- -5'
26698 3' -54.5 NC_005808.1 + 14796 0.68 0.571769
Target:  5'- cGCGAggacGugCUGCG-GCUGCGCGGcgCg -3'
miRNA:   3'- cUGCU----UugGGCGUgCGACGCGCUuaG- -5'
26698 3' -54.5 NC_005808.1 + 5611 0.67 0.582974
Target:  5'- cGGCGggGugcguUUCGCGCGUgGCGCGGcgCa -3'
miRNA:   3'- -CUGCuuU-----GGGCGUGCGaCGCGCUuaG- -5'
26698 3' -54.5 NC_005808.1 + 220 0.67 0.593095
Target:  5'- uGGCGuagguAugCCGCAUGUUGUagggccggcgguaGCGAAUCc -3'
miRNA:   3'- -CUGCu----UugGGCGUGCGACG-------------CGCUUAG- -5'
26698 3' -54.5 NC_005808.1 + 26521 0.67 0.594222
Target:  5'- cACGAccaucuacGGCgCCGCGCGCggcggccacgUGCGCGAAc- -3'
miRNA:   3'- cUGCU--------UUG-GGCGUGCG----------ACGCGCUUag -5'
26698 3' -54.5 NC_005808.1 + 33177 0.67 0.598731
Target:  5'- cGACGcuauucaagaccugcAAGCCCGCgGC-CUGCGCGAc-- -3'
miRNA:   3'- -CUGC---------------UUUGGGCG-UGcGACGCGCUuag -5'
26698 3' -54.5 NC_005808.1 + 35600 0.67 0.61681
Target:  5'- cGCGAgccGACCCGCucGCGC-GUGUGAAa- -3'
miRNA:   3'- cUGCU---UUGGGCG--UGCGaCGCGCUUag -5'
26698 3' -54.5 NC_005808.1 + 8174 0.66 0.639454
Target:  5'- cGCGugcGCCCGgAUGCUGCcgGCGAuuucAUCg -3'
miRNA:   3'- cUGCuu-UGGGCgUGCGACG--CGCU----UAG- -5'
26698 3' -54.5 NC_005808.1 + 14243 0.66 0.650772
Target:  5'- --gGAAACcauCCGCGCGCUGCcCGAc-- -3'
miRNA:   3'- cugCUUUG---GGCGUGCGACGcGCUuag -5'
26698 3' -54.5 NC_005808.1 + 21595 0.66 0.650772
Target:  5'- --gGAAGCCgGCACGaugcuuUGCuGUGAAUCg -3'
miRNA:   3'- cugCUUUGGgCGUGCg-----ACG-CGCUUAG- -5'
26698 3' -54.5 NC_005808.1 + 6264 0.66 0.650772
Target:  5'- uGCGGuuGAUCUGCGCGCUGgGCa---- -3'
miRNA:   3'- cUGCU--UUGGGCGUGCGACgCGcuuag -5'
26698 3' -54.5 NC_005808.1 + 39026 0.66 0.658684
Target:  5'- cGCGGAucgguguacgcccaGCCCGC-UGCUGCGCuguUCg -3'
miRNA:   3'- cUGCUU--------------UGGGCGuGCGACGCGcuuAG- -5'
26698 3' -54.5 NC_005808.1 + 9195 0.66 0.66207
Target:  5'- cGACGuuGGCCUGCucgGCgGCGCGGcgCa -3'
miRNA:   3'- -CUGCu-UUGGGCGug-CGaCGCGCUuaG- -5'
26698 3' -54.5 NC_005808.1 + 14053 0.66 0.66207
Target:  5'- cGCGaAAGCCCG-GCGCUGgGCGucGUUg -3'
miRNA:   3'- cUGC-UUUGGGCgUGCGACgCGCu-UAG- -5'
26698 3' -54.5 NC_005808.1 + 36121 0.66 0.66207
Target:  5'- uGCG-GGCCUGCGCGgcgugcaguucCUGCGCGAc-- -3'
miRNA:   3'- cUGCuUUGGGCGUGC-----------GACGCGCUuag -5'
26698 3' -54.5 NC_005808.1 + 39059 0.66 0.66207
Target:  5'- uGGCGGGA-CUGCGCGgUGUGCGGc-- -3'
miRNA:   3'- -CUGCUUUgGGCGUGCgACGCGCUuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.