miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26698 3' -54.5 NC_005808.1 + 20609 1.09 0.000832
Target:  5'- cGACGAAACCCGCACGCUGCGCGAAUCc -3'
miRNA:   3'- -CUGCUUUGGGCGUGCGACGCGCUUAG- -5'
26698 3' -54.5 NC_005808.1 + 29576 0.77 0.171098
Target:  5'- uGACGAGGCCguCGCcacuGCGCUGCGCGGc-- -3'
miRNA:   3'- -CUGCUUUGG--GCG----UGCGACGCGCUuag -5'
26698 3' -54.5 NC_005808.1 + 30364 0.74 0.264414
Target:  5'- cGCGAGaACCCGC-CGCUGCuguaggGUGggUCg -3'
miRNA:   3'- cUGCUU-UGGGCGuGCGACG------CGCuuAG- -5'
26698 3' -54.5 NC_005808.1 + 17287 0.73 0.285947
Target:  5'- cACGAAGCCgGCGcCGCggGCGCGcAUCc -3'
miRNA:   3'- cUGCUUUGGgCGU-GCGa-CGCGCuUAG- -5'
26698 3' -54.5 NC_005808.1 + 20065 0.73 0.285947
Target:  5'- -cCGgcACgCGCGCGCUGCGCGugcUCg -3'
miRNA:   3'- cuGCuuUGgGCGUGCGACGCGCuu-AG- -5'
26698 3' -54.5 NC_005808.1 + 32194 0.73 0.29646
Target:  5'- uGGCGAGGCCaucgGCGCGCUGCaucacccggacaucgGCGAcAUCg -3'
miRNA:   3'- -CUGCUUUGGg---CGUGCGACG---------------CGCU-UAG- -5'
26698 3' -54.5 NC_005808.1 + 10875 0.73 0.301057
Target:  5'- aGGCGugaaaAAGCCCGCGCGCgGCGgGcuGGUCa -3'
miRNA:   3'- -CUGC-----UUUGGGCGUGCGaCGCgC--UUAG- -5'
26698 3' -54.5 NC_005808.1 + 35785 0.72 0.324863
Target:  5'- cGACGAAACCCGCGCcgugucccugGCUGaccagGCG-GUCa -3'
miRNA:   3'- -CUGCUUUGGGCGUG----------CGACg----CGCuUAG- -5'
26698 3' -54.5 NC_005808.1 + 14852 0.72 0.333104
Target:  5'- uGGCGGccAGCgCCGCACGCUGgGCGc--- -3'
miRNA:   3'- -CUGCU--UUG-GGCGUGCGACgCGCuuag -5'
26698 3' -54.5 NC_005808.1 + 16804 0.72 0.341497
Target:  5'- aACGAuACCgaGCGCGCcGCGCGcAUCg -3'
miRNA:   3'- cUGCUuUGGg-CGUGCGaCGCGCuUAG- -5'
26698 3' -54.5 NC_005808.1 + 9508 0.71 0.385719
Target:  5'- gGGCGAGGauguaggccgCCGCGuCGCUGCGCGAc-- -3'
miRNA:   3'- -CUGCUUUg---------GGCGU-GCGACGCGCUuag -5'
26698 3' -54.5 NC_005808.1 + 17929 0.71 0.395007
Target:  5'- gGACGugGCCCGCG-GCggGCGCGAc-- -3'
miRNA:   3'- -CUGCuuUGGGCGUgCGa-CGCGCUuag -5'
26698 3' -54.5 NC_005808.1 + 36856 0.7 0.423718
Target:  5'- -uCGcuGCCCgGCGCGCUGgGCG-AUCu -3'
miRNA:   3'- cuGCuuUGGG-CGUGCGACgCGCuUAG- -5'
26698 3' -54.5 NC_005808.1 + 28920 0.7 0.433562
Target:  5'- cGACGAcAUCCuCACGgUGCGCGucauAUCa -3'
miRNA:   3'- -CUGCUuUGGGcGUGCgACGCGCu---UAG- -5'
26698 3' -54.5 NC_005808.1 + 17512 0.7 0.443538
Target:  5'- cACGgcGCCgGgCGCGCUGCGCuGggUg -3'
miRNA:   3'- cUGCuuUGGgC-GUGCGACGCG-CuuAg -5'
26698 3' -54.5 NC_005808.1 + 24801 0.7 0.452627
Target:  5'- aGGCGGAAUacugCGCGCGCUucuauccguucgcGCGCGAcUCg -3'
miRNA:   3'- -CUGCUUUGg---GCGUGCGA-------------CGCGCUuAG- -5'
26698 3' -54.5 NC_005808.1 + 3483 0.7 0.452627
Target:  5'- gGGCGAGuucgacgGCCCGCuguaccaguACGCaGCGCGAGa- -3'
miRNA:   3'- -CUGCUU-------UGGGCG---------UGCGaCGCGCUUag -5'
26698 3' -54.5 NC_005808.1 + 27994 0.7 0.453643
Target:  5'- --gGAAGCCgaCGCACuGCUGaaaaGCGGAUCg -3'
miRNA:   3'- cugCUUUGG--GCGUG-CGACg---CGCUUAG- -5'
26698 3' -54.5 NC_005808.1 + 22479 0.69 0.474217
Target:  5'- aGGCGGAACCagggGCGgGCUGgGCuGGUCa -3'
miRNA:   3'- -CUGCUUUGGg---CGUgCGACgCGcUUAG- -5'
26698 3' -54.5 NC_005808.1 + 18024 0.69 0.502711
Target:  5'- gGACGGcccgaccguggccGGCCuCGCcaucgccGCGCUGCGCGAccacgcgGUCa -3'
miRNA:   3'- -CUGCU-------------UUGG-GCG-------UGCGACGCGCU-------UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.