Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26698 | 3' | -54.5 | NC_005808.1 | + | 26521 | 0.67 | 0.594222 |
Target: 5'- cACGAccaucuacGGCgCCGCGCGCggcggccacgUGCGCGAAc- -3' miRNA: 3'- cUGCU--------UUG-GGCGUGCG----------ACGCGCUUag -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 26031 | 0.68 | 0.538503 |
Target: 5'- cGGCGAuggcaucaaAGCCCGCGCGgCggGCGCGc--- -3' miRNA: 3'- -CUGCU---------UUGGGCGUGC-Ga-CGCGCuuag -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 24801 | 0.7 | 0.452627 |
Target: 5'- aGGCGGAAUacugCGCGCGCUucuauccguucgcGCGCGAcUCg -3' miRNA: 3'- -CUGCUUUGg---GCGUGCGA-------------CGCGCUuAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 24149 | 0.66 | 0.683447 |
Target: 5'- cGCGccuGGCCCaGCGCcucgacgGCUGCGCGcuUCg -3' miRNA: 3'- cUGCu--UUGGG-CGUG-------CGACGCGCuuAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 22479 | 0.69 | 0.474217 |
Target: 5'- aGGCGGAACCagggGCGgGCUGgGCuGGUCa -3' miRNA: 3'- -CUGCUUUGGg---CGUgCGACgCGcUUAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 21595 | 0.66 | 0.650772 |
Target: 5'- --gGAAGCCgGCACGaugcuuUGCuGUGAAUCg -3' miRNA: 3'- cugCUUUGGgCGUGCg-----ACG-CGCUUAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 21214 | 0.68 | 0.560617 |
Target: 5'- cGCGcAGGCCCaGCGCGCcauUGCGaCGAAcUCg -3' miRNA: 3'- cUGC-UUUGGG-CGUGCG---ACGC-GCUU-AG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 20609 | 1.09 | 0.000832 |
Target: 5'- cGACGAAACCCGCACGCUGCGCGAAUCc -3' miRNA: 3'- -CUGCUUUGGGCGUGCGACGCGCUUAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 20065 | 0.73 | 0.285947 |
Target: 5'- -cCGgcACgCGCGCGCUGCGCGugcUCg -3' miRNA: 3'- cuGCuuUGgGCGUGCGACGCGCuu-AG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 18024 | 0.69 | 0.502711 |
Target: 5'- gGACGGcccgaccguggccGGCCuCGCcaucgccGCGCUGCGCGAccacgcgGUCa -3' miRNA: 3'- -CUGCU-------------UUGG-GCG-------UGCGACGCGCU-------UAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 17929 | 0.71 | 0.395007 |
Target: 5'- gGACGugGCCCGCG-GCggGCGCGAc-- -3' miRNA: 3'- -CUGCuuUGGGCGUgCGa-CGCGCUuag -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 17748 | 0.66 | 0.67334 |
Target: 5'- uGGCGAAACCC-CAgGUgUGCaguucgagcaGCGAGUCg -3' miRNA: 3'- -CUGCUUUGGGcGUgCG-ACG----------CGCUUAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 17512 | 0.7 | 0.443538 |
Target: 5'- cACGgcGCCgGgCGCGCUGCGCuGggUg -3' miRNA: 3'- cUGCuuUGGgC-GUGCGACGCG-CuuAg -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 17287 | 0.73 | 0.285947 |
Target: 5'- cACGAAGCCgGCGcCGCggGCGCGcAUCc -3' miRNA: 3'- cUGCUUUGGgCGU-GCGa-CGCGCuUAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 16804 | 0.72 | 0.341497 |
Target: 5'- aACGAuACCgaGCGCGCcGCGCGcAUCg -3' miRNA: 3'- cUGCUuUGGg-CGUGCGaCGCGCuUAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 14852 | 0.72 | 0.333104 |
Target: 5'- uGGCGGccAGCgCCGCACGCUGgGCGc--- -3' miRNA: 3'- -CUGCU--UUG-GGCGUGCGACgCGCuuag -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 14796 | 0.68 | 0.571769 |
Target: 5'- cGCGAggacGugCUGCG-GCUGCGCGGcgCg -3' miRNA: 3'- cUGCU----UugGGCGUgCGACGCGCUuaG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 14243 | 0.66 | 0.650772 |
Target: 5'- --gGAAACcauCCGCGCGCUGCcCGAc-- -3' miRNA: 3'- cugCUUUG---GGCGUGCGACGcGCUuag -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 14053 | 0.66 | 0.66207 |
Target: 5'- cGCGaAAGCCCG-GCGCUGgGCGucGUUg -3' miRNA: 3'- cUGC-UUUGGGCgUGCGACgCGCu-UAG- -5' |
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26698 | 3' | -54.5 | NC_005808.1 | + | 13920 | 0.66 | 0.695743 |
Target: 5'- cGACGugGCgCGcCGCGCUG-GCGAGg- -3' miRNA: 3'- -CUGCuuUGgGC-GUGCGACgCGCUUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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