Results 61 - 80 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26699 | 5' | -59.5 | NC_005808.1 | + | 30389 | 0.67 | 0.408982 |
Target: 5'- uGCGuCCCGAccagggGCAGGCaGCG-CgGGCCGg -3' miRNA: 3'- gCGCuGGGCU------CGUUCG-CGCuG-CUGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 8170 | 0.67 | 0.408982 |
Target: 5'- uGCGGCCCaGGaAGGCGCuGGCGuCCu -3' miRNA: 3'- gCGCUGGGcUCgUUCGCG-CUGCuGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 40831 | 0.67 | 0.408982 |
Target: 5'- -uCGGCCCGAcGCGccaGGCGCaGGcCGGCCa -3' miRNA: 3'- gcGCUGGGCU-CGU---UCGCG-CU-GCUGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 15390 | 0.67 | 0.418142 |
Target: 5'- cCGCGugC-GGGCcGGCGaagaugccgGACGACCGa -3' miRNA: 3'- -GCGCugGgCUCGuUCGCg--------CUGCUGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 41200 | 0.67 | 0.418142 |
Target: 5'- gGCGGCCaUGAGUGAaaccguuguGCGCGugG-CCGc -3' miRNA: 3'- gCGCUGG-GCUCGUU---------CGCGCugCuGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 37819 | 0.67 | 0.418142 |
Target: 5'- gGCGugCUGGGCGcAGUGUgGGCGaacGCCGa -3' miRNA: 3'- gCGCugGGCUCGU-UCGCG-CUGC---UGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 31317 | 0.67 | 0.418142 |
Target: 5'- gGUGGCCCG-GCuggaaucccAGGuCGCGGCGACa- -3' miRNA: 3'- gCGCUGGGCuCG---------UUC-GCGCUGCUGgc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 28183 | 0.67 | 0.418142 |
Target: 5'- uGCccacGCCC-AGCAGGUGCGGCG-CCu -3' miRNA: 3'- gCGc---UGGGcUCGUUCGCGCUGCuGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 41914 | 0.66 | 0.426492 |
Target: 5'- gGCG-CCCG-GCcGGCGCcgccguaGGCGGCCu -3' miRNA: 3'- gCGCuGGGCuCGuUCGCG-------CUGCUGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 31526 | 0.66 | 0.427426 |
Target: 5'- gCGCGACCCggacacguucGAGCAGuucGuCGCcaauGCGGCCGa -3' miRNA: 3'- -GCGCUGGG----------CUCGUU---C-GCGc---UGCUGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 1316 | 0.66 | 0.427426 |
Target: 5'- gGCGACggccaccaggCCGA-CAAGCGCGAgGaaGCCGu -3' miRNA: 3'- gCGCUG----------GGCUcGUUCGCGCUgC--UGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 27827 | 0.66 | 0.427426 |
Target: 5'- gCGCGcuGCCCGcGguGGCGC--CGGCCGc -3' miRNA: 3'- -GCGC--UGGGCuCguUCGCGcuGCUGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 41647 | 0.66 | 0.427426 |
Target: 5'- aCGUGGCUCGAcacGCAgAGCGUGGagaauuCGACCa -3' miRNA: 3'- -GCGCUGGGCU---CGU-UCGCGCU------GCUGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 18895 | 0.66 | 0.436831 |
Target: 5'- cCGCGACCUGGGCGcuaccGGCcuguacGUGuccggccCGACCGa -3' miRNA: 3'- -GCGCUGGGCUCGU-----UCG------CGCu------GCUGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 22389 | 0.66 | 0.436831 |
Target: 5'- aGcCGGCCgCGGGCGcugccaagaccgAGgGCGACGACa- -3' miRNA: 3'- gC-GCUGG-GCUCGU------------UCgCGCUGCUGgc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 29416 | 0.66 | 0.445396 |
Target: 5'- aCGcCGGCCaaGGGCGcccAGCGCGGCcgacacuGGCCGa -3' miRNA: 3'- -GC-GCUGGg-CUCGU---UCGCGCUG-------CUGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 16649 | 0.66 | 0.446353 |
Target: 5'- aCGaCGGCUacaaGGuCAAGCGCGGCGACa- -3' miRNA: 3'- -GC-GCUGGg---CUcGUUCGCGCUGCUGgc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 2910 | 0.66 | 0.446353 |
Target: 5'- gCGCGcCCCGAuGUucGCGUucgaguucGACGGCCc -3' miRNA: 3'- -GCGCuGGGCU-CGuuCGCG--------CUGCUGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 41789 | 0.66 | 0.446353 |
Target: 5'- -uCGGCaaGGGCuGGGCGCGGCGcgucGCCGg -3' miRNA: 3'- gcGCUGggCUCG-UUCGCGCUGC----UGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 19874 | 0.66 | 0.455991 |
Target: 5'- gGCGugCCGAagGCGucGCGCGccuucuUGGCCGu -3' miRNA: 3'- gCGCugGGCU--CGUu-CGCGCu-----GCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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