miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26699 5' -59.5 NC_005808.1 + 33402 0.69 0.309369
Target:  5'- cCGCGcCgCCGAGCAGGCcaacguCGACGGCg- -3'
miRNA:   3'- -GCGCuG-GGCUCGUUCGc-----GCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 26600 0.69 0.301956
Target:  5'- gGCGACCUGucccuGC--GCGCGGCGcACCu -3'
miRNA:   3'- gCGCUGGGCu----CGuuCGCGCUGC-UGGc -5'
26699 5' -59.5 NC_005808.1 + 24447 0.69 0.29396
Target:  5'- gCGCGGCCUcGGCGAcauugacGC-CGACGACCu -3'
miRNA:   3'- -GCGCUGGGcUCGUU-------CGcGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 35359 0.69 0.287542
Target:  5'- gGCGGCCgacaucgccgaGGGUGAGCGCGGCGcagaugcuGCCGu -3'
miRNA:   3'- gCGCUGGg----------CUCGUUCGCGCUGC--------UGGC- -5'
26699 5' -59.5 NC_005808.1 + 14898 0.7 0.273675
Target:  5'- gGCGAgCCGcuGCcGGCGCG-CGGCCu -3'
miRNA:   3'- gCGCUgGGCu-CGuUCGCGCuGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 10259 0.7 0.273675
Target:  5'- aGCGACCUGGGCGGcgguuGuCGgGACG-CCGg -3'
miRNA:   3'- gCGCUGGGCUCGUU-----C-GCgCUGCuGGC- -5'
26699 5' -59.5 NC_005808.1 + 28673 0.7 0.266945
Target:  5'- gGCGGCCUc-GCcAGCGCGGCGcGCCa -3'
miRNA:   3'- gCGCUGGGcuCGuUCGCGCUGC-UGGc -5'
26699 5' -59.5 NC_005808.1 + 15709 0.7 0.26628
Target:  5'- gGCGuccGCCUGGGCAucgaacuGGCGCGA-GGCCa -3'
miRNA:   3'- gCGC---UGGGCUCGU-------UCGCGCUgCUGGc -5'
26699 5' -59.5 NC_005808.1 + 22085 0.7 0.260349
Target:  5'- gCGCGGCUCGAu--GGCGUGAaUGACCGu -3'
miRNA:   3'- -GCGCUGGGCUcguUCGCGCU-GCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 39779 0.7 0.253887
Target:  5'- gCGUGGCCgCGAGCAccuGGCcCGACGaAUCGa -3'
miRNA:   3'- -GCGCUGG-GCUCGU---UCGcGCUGC-UGGC- -5'
26699 5' -59.5 NC_005808.1 + 37063 0.7 0.253887
Target:  5'- gGCGACCUGGGCGGaaccUG-GGCGGCCGg -3'
miRNA:   3'- gCGCUGGGCUCGUUc---GCgCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 11393 0.7 0.247558
Target:  5'- gGCGACCUGAuggGCcagggucuuGAGCaGCGGCGAgCCGg -3'
miRNA:   3'- gCGCUGGGCU---CG---------UUCG-CGCUGCU-GGC- -5'
26699 5' -59.5 NC_005808.1 + 26297 0.7 0.247558
Target:  5'- uCGCuuCCCGuGC--GCGaCGACGACCGg -3'
miRNA:   3'- -GCGcuGGGCuCGuuCGC-GCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 32518 0.71 0.23529
Target:  5'- cCGCG-CCCGuGCAGGCugGUGAUG-CCGg -3'
miRNA:   3'- -GCGCuGGGCuCGUUCG--CGCUGCuGGC- -5'
26699 5' -59.5 NC_005808.1 + 27331 0.71 0.22935
Target:  5'- gGCGACagCGGGCAAcuguuuGUGCGGCaGGCCGa -3'
miRNA:   3'- gCGCUGg-GCUCGUU------CGCGCUG-CUGGC- -5'
26699 5' -59.5 NC_005808.1 + 15171 0.71 0.221248
Target:  5'- uGCGGCcgCCGGGCGcggugcgccaggcGCGCGACGACUa -3'
miRNA:   3'- gCGCUG--GGCUCGUu------------CGCGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 42063 0.71 0.216168
Target:  5'- aGCGGCCCGcGCAcguccgagguauucGGCcaGCGAUGGCCc -3'
miRNA:   3'- gCGCUGGGCuCGU--------------UCG--CGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 10936 0.71 0.212287
Target:  5'- uGCagGGCCuCGGGCAGuuGCGCGGCGACa- -3'
miRNA:   3'- gCG--CUGG-GCUCGUU--CGCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 13138 0.72 0.189742
Target:  5'- gCGCGcuucgucgccugguGCCagGAGCAccugGGCGCGACGugCGa -3'
miRNA:   3'- -GCGC--------------UGGg-CUCGU----UCGCGCUGCugGC- -5'
26699 5' -59.5 NC_005808.1 + 3465 0.72 0.186278
Target:  5'- gCGCGcCCCGAuguucGCGGGCGaguuCGACGGCCc -3'
miRNA:   3'- -GCGCuGGGCU-----CGUUCGC----GCUGCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.