miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26699 5' -59.5 NC_005808.1 + 13574 0.67 0.391043
Target:  5'- -uCGACCUG-GCcgAAGCGCGGCGcCUGg -3'
miRNA:   3'- gcGCUGGGCuCG--UUCGCGCUGCuGGC- -5'
26699 5' -59.5 NC_005808.1 + 14374 0.67 0.391043
Target:  5'- -cCGACCCGcGCGuggucgucGGCGUGGcCGACCu -3'
miRNA:   3'- gcGCUGGGCuCGU--------UCGCGCU-GCUGGc -5'
26699 5' -59.5 NC_005808.1 + 34394 0.67 0.391043
Target:  5'- gCGCGACUaCGAgGCcguGCGCGAUGaaaucGCCGg -3'
miRNA:   3'- -GCGCUGG-GCU-CGuu-CGCGCUGC-----UGGC- -5'
26699 5' -59.5 NC_005808.1 + 12112 0.67 0.391043
Target:  5'- uCGaCGACUUucAGCAGGUgacGCGAUGACCGg -3'
miRNA:   3'- -GC-GCUGGGc-UCGUUCG---CGCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 22233 0.67 0.391043
Target:  5'- aCGCGGCCCuGGUugucGGcCGCGAUGGCg- -3'
miRNA:   3'- -GCGCUGGGcUCGu---UC-GCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 8842 0.67 0.382268
Target:  5'- cCGCaACgCGGGCcAGCGCGuuGGCCu -3'
miRNA:   3'- -GCGcUGgGCUCGuUCGCGCugCUGGc -5'
26699 5' -59.5 NC_005808.1 + 34069 0.67 0.373625
Target:  5'- uGCGAuaCCUGGGCAAGUucGCcGGCGACa- -3'
miRNA:   3'- gCGCU--GGGCUCGUUCG--CG-CUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 39656 0.67 0.373625
Target:  5'- uCGaCGugCCGcGCGAcGCgGUGugGGCCGg -3'
miRNA:   3'- -GC-GCugGGCuCGUU-CG-CGCugCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 1078 0.67 0.373625
Target:  5'- uGCGACCCG-GCGcGCGUacuucauguuGGCGGCgGu -3'
miRNA:   3'- gCGCUGGGCuCGUuCGCG----------CUGCUGgC- -5'
26699 5' -59.5 NC_005808.1 + 27418 0.68 0.365116
Target:  5'- uCGCGcGCCUGGcGCAccGCGCccGGCGGCCGc -3'
miRNA:   3'- -GCGC-UGGGCU-CGUu-CGCG--CUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 31859 0.68 0.365116
Target:  5'- gCGCGcCCUuGGCGAGCagcaagGCGACGACg- -3'
miRNA:   3'- -GCGCuGGGcUCGUUCG------CGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 25597 0.68 0.362589
Target:  5'- uGCGGCCCaGGCAguggcaaccacggcGGCGCGGuCG-CCa -3'
miRNA:   3'- gCGCUGGGcUCGU--------------UCGCGCU-GCuGGc -5'
26699 5' -59.5 NC_005808.1 + 36198 0.68 0.356741
Target:  5'- uCGaCGACaucaCCGAGgGcGcCGCGGCGGCCGa -3'
miRNA:   3'- -GC-GCUG----GGCUCgUuC-GCGCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 36061 0.68 0.356741
Target:  5'- gGCGAUUCGGGCGA---CGACGACCc -3'
miRNA:   3'- gCGCUGGGCUCGUUcgcGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 14030 0.68 0.332436
Target:  5'- gGUGGCCgaCGuGCGcGcCGCGAUGGCCGg -3'
miRNA:   3'- gCGCUGG--GCuCGUuC-GCGCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 14767 0.68 0.324609
Target:  5'- gCGCGGCCggcgccaccgCGGGCAGcgcGCGCGAgGACg- -3'
miRNA:   3'- -GCGCUGG----------GCUCGUU---CGCGCUgCUGgc -5'
26699 5' -59.5 NC_005808.1 + 33780 0.68 0.322288
Target:  5'- gGCuGGCCCGAcccaGCAgaucgguacugaccGGCGCGGcCGACCc -3'
miRNA:   3'- gCG-CUGGGCU----CGU--------------UCGCGCU-GCUGGc -5'
26699 5' -59.5 NC_005808.1 + 14983 0.69 0.31692
Target:  5'- -cCGGCCCaucGuCAAGgGCGACGACCa -3'
miRNA:   3'- gcGCUGGGcu-C-GUUCgCGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 32680 0.69 0.31692
Target:  5'- aCGUGaaGCCCGAGCAGuucGC-CGACGugCu -3'
miRNA:   3'- -GCGC--UGGGCUCGUU---CGcGCUGCugGc -5'
26699 5' -59.5 NC_005808.1 + 36112 0.69 0.309369
Target:  5'- gCGCGugaAUgCGGGCcuGCGCGGCGugCa -3'
miRNA:   3'- -GCGC---UGgGCUCGuuCGCGCUGCugGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.