miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26699 5' -59.5 NC_005808.1 + 22389 0.66 0.436831
Target:  5'- aGcCGGCCgCGGGCGcugccaagaccgAGgGCGACGACa- -3'
miRNA:   3'- gC-GCUGG-GCUCGU------------UCgCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 27827 0.66 0.427426
Target:  5'- gCGCGcuGCCCGcGguGGCGC--CGGCCGc -3'
miRNA:   3'- -GCGC--UGGGCuCguUCGCGcuGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 1316 0.66 0.427426
Target:  5'- gGCGACggccaccaggCCGA-CAAGCGCGAgGaaGCCGu -3'
miRNA:   3'- gCGCUG----------GGCUcGUUCGCGCUgC--UGGC- -5'
26699 5' -59.5 NC_005808.1 + 31526 0.66 0.427426
Target:  5'- gCGCGACCCggacacguucGAGCAGuucGuCGCcaauGCGGCCGa -3'
miRNA:   3'- -GCGCUGGG----------CUCGUU---C-GCGc---UGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 41647 0.66 0.427426
Target:  5'- aCGUGGCUCGAcacGCAgAGCGUGGagaauuCGACCa -3'
miRNA:   3'- -GCGCUGGGCU---CGU-UCGCGCU------GCUGGc -5'
26699 5' -59.5 NC_005808.1 + 41914 0.66 0.426492
Target:  5'- gGCG-CCCG-GCcGGCGCcgccguaGGCGGCCu -3'
miRNA:   3'- gCGCuGGGCuCGuUCGCG-------CUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 41200 0.67 0.418142
Target:  5'- gGCGGCCaUGAGUGAaaccguuguGCGCGugG-CCGc -3'
miRNA:   3'- gCGCUGG-GCUCGUU---------CGCGCugCuGGC- -5'
26699 5' -59.5 NC_005808.1 + 15390 0.67 0.418142
Target:  5'- cCGCGugC-GGGCcGGCGaagaugccgGACGACCGa -3'
miRNA:   3'- -GCGCugGgCUCGuUCGCg--------CUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 28183 0.67 0.418142
Target:  5'- uGCccacGCCC-AGCAGGUGCGGCG-CCu -3'
miRNA:   3'- gCGc---UGGGcUCGUUCGCGCUGCuGGc -5'
26699 5' -59.5 NC_005808.1 + 31317 0.67 0.418142
Target:  5'- gGUGGCCCG-GCuggaaucccAGGuCGCGGCGACa- -3'
miRNA:   3'- gCGCUGGGCuCG---------UUC-GCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 37819 0.67 0.418142
Target:  5'- gGCGugCUGGGCGcAGUGUgGGCGaacGCCGa -3'
miRNA:   3'- gCGCugGGCUCGU-UCGCG-CUGC---UGGC- -5'
26699 5' -59.5 NC_005808.1 + 21835 0.67 0.408982
Target:  5'- gCGCGA--UGAGuCGAGCGCGGCGcagcGCCu -3'
miRNA:   3'- -GCGCUggGCUC-GUUCGCGCUGC----UGGc -5'
26699 5' -59.5 NC_005808.1 + 40831 0.67 0.408982
Target:  5'- -uCGGCCCGAcGCGccaGGCGCaGGcCGGCCa -3'
miRNA:   3'- gcGCUGGGCU-CGU---UCGCG-CU-GCUGGc -5'
26699 5' -59.5 NC_005808.1 + 30389 0.67 0.408982
Target:  5'- uGCGuCCCGAccagggGCAGGCaGCG-CgGGCCGg -3'
miRNA:   3'- gCGCuGGGCU------CGUUCG-CGCuG-CUGGC- -5'
26699 5' -59.5 NC_005808.1 + 8170 0.67 0.408982
Target:  5'- uGCGGCCCaGGaAGGCGCuGGCGuCCu -3'
miRNA:   3'- gCGCUGGGcUCgUUCGCG-CUGCuGGc -5'
26699 5' -59.5 NC_005808.1 + 38028 0.67 0.399948
Target:  5'- gGCG-CaCCGAGC-AGCGCcucGGCGACUu -3'
miRNA:   3'- gCGCuG-GGCUCGuUCGCG---CUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 34276 0.67 0.399948
Target:  5'- aCGCGcaacuuucCCCGAGC-AGCGCGcACcGCUGg -3'
miRNA:   3'- -GCGCu-------GGGCUCGuUCGCGC-UGcUGGC- -5'
26699 5' -59.5 NC_005808.1 + 34221 0.67 0.399948
Target:  5'- gGCGAuuCUCGAagauuCGAGCGCGGCGGCg- -3'
miRNA:   3'- gCGCU--GGGCUc----GUUCGCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 21947 0.67 0.399948
Target:  5'- --aGGCCCaacgGGGCAcaguGCGCGgaACGACCGa -3'
miRNA:   3'- gcgCUGGG----CUCGUu---CGCGC--UGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 28788 0.67 0.396371
Target:  5'- uCGCGcuuGCCCugguugccgaucuuGAGCAgccAGCGCGccgucgucggguuGCGGCCGg -3'
miRNA:   3'- -GCGC---UGGG--------------CUCGU---UCGCGC-------------UGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.