miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26699 5' -59.5 NC_005808.1 + 16649 0.66 0.446353
Target:  5'- aCGaCGGCUacaaGGuCAAGCGCGGCGACa- -3'
miRNA:   3'- -GC-GCUGGg---CUcGUUCGCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 41789 0.66 0.446353
Target:  5'- -uCGGCaaGGGCuGGGCGCGGCGcgucGCCGg -3'
miRNA:   3'- gcGCUGggCUCG-UUCGCGCUGC----UGGC- -5'
26699 5' -59.5 NC_005808.1 + 16332 0.66 0.455991
Target:  5'- gCGCGAgCCGAcCAGGC-CGGCGGgugcCCGu -3'
miRNA:   3'- -GCGCUgGGCUcGUUCGcGCUGCU----GGC- -5'
26699 5' -59.5 NC_005808.1 + 29692 0.66 0.455991
Target:  5'- gCGCGG-CCGAGCGcaucgccaaAG-GCGACGACa- -3'
miRNA:   3'- -GCGCUgGGCUCGU---------UCgCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 726 0.66 0.455991
Target:  5'- -aCGGCCaaguCGAGCGccuGGCG-GAUGACCGa -3'
miRNA:   3'- gcGCUGG----GCUCGU---UCGCgCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 40363 0.66 0.465739
Target:  5'- gCGCGGCCaCGcGCcgccugcuGCGCGugGugCu -3'
miRNA:   3'- -GCGCUGG-GCuCGuu------CGCGCugCugGc -5'
26699 5' -59.5 NC_005808.1 + 34221 0.67 0.399948
Target:  5'- gGCGAuuCUCGAagauuCGAGCGCGGCGGCg- -3'
miRNA:   3'- gCGCU--GGGCUc----GUUCGCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 21947 0.67 0.399948
Target:  5'- --aGGCCCaacgGGGCAcaguGCGCGgaACGACCGa -3'
miRNA:   3'- gcgCUGGG----CUCGUu---CGCGC--UGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 39656 0.67 0.373625
Target:  5'- uCGaCGugCCGcGCGAcGCgGUGugGGCCGg -3'
miRNA:   3'- -GC-GCugGGCuCGUU-CG-CGCugCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 34069 0.67 0.373625
Target:  5'- uGCGAuaCCUGGGCAAGUucGCcGGCGACa- -3'
miRNA:   3'- gCGCU--GGGCUCGUUCG--CG-CUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 1078 0.67 0.373625
Target:  5'- uGCGACCCG-GCGcGCGUacuucauguuGGCGGCgGu -3'
miRNA:   3'- gCGCUGGGCuCGUuCGCG----------CUGCUGgC- -5'
26699 5' -59.5 NC_005808.1 + 12112 0.67 0.391043
Target:  5'- uCGaCGACUUucAGCAGGUgacGCGAUGACCGg -3'
miRNA:   3'- -GC-GCUGGGc-UCGUUCG---CGCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 13574 0.67 0.391043
Target:  5'- -uCGACCUG-GCcgAAGCGCGGCGcCUGg -3'
miRNA:   3'- gcGCUGGGCuCG--UUCGCGCUGCuGGC- -5'
26699 5' -59.5 NC_005808.1 + 14374 0.67 0.391043
Target:  5'- -cCGACCCGcGCGuggucgucGGCGUGGcCGACCu -3'
miRNA:   3'- gcGCUGGGCuCGU--------UCGCGCU-GCUGGc -5'
26699 5' -59.5 NC_005808.1 + 34394 0.67 0.391043
Target:  5'- gCGCGACUaCGAgGCcguGCGCGAUGaaaucGCCGg -3'
miRNA:   3'- -GCGCUGG-GCU-CGuu-CGCGCUGC-----UGGC- -5'
26699 5' -59.5 NC_005808.1 + 8170 0.67 0.408982
Target:  5'- uGCGGCCCaGGaAGGCGCuGGCGuCCu -3'
miRNA:   3'- gCGCUGGGcUCgUUCGCG-CUGCuGGc -5'
26699 5' -59.5 NC_005808.1 + 30389 0.67 0.408982
Target:  5'- uGCGuCCCGAccagggGCAGGCaGCG-CgGGCCGg -3'
miRNA:   3'- gCGCuGGGCU------CGUUCG-CGCuG-CUGGC- -5'
26699 5' -59.5 NC_005808.1 + 21835 0.67 0.408982
Target:  5'- gCGCGA--UGAGuCGAGCGCGGCGcagcGCCu -3'
miRNA:   3'- -GCGCUggGCUC-GUUCGCGCUGC----UGGc -5'
26699 5' -59.5 NC_005808.1 + 37819 0.67 0.418142
Target:  5'- gGCGugCUGGGCGcAGUGUgGGCGaacGCCGa -3'
miRNA:   3'- gCGCugGGCUCGU-UCGCG-CUGC---UGGC- -5'
26699 5' -59.5 NC_005808.1 + 41200 0.67 0.418142
Target:  5'- gGCGGCCaUGAGUGAaaccguuguGCGCGugG-CCGc -3'
miRNA:   3'- gCGCUGG-GCUCGUU---------CGCGCugCuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.