miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26699 5' -59.5 NC_005808.1 + 41647 0.66 0.427426
Target:  5'- aCGUGGCUCGAcacGCAgAGCGUGGagaauuCGACCa -3'
miRNA:   3'- -GCGCUGGGCU---CGU-UCGCGCU------GCUGGc -5'
26699 5' -59.5 NC_005808.1 + 41789 0.66 0.446353
Target:  5'- -uCGGCaaGGGCuGGGCGCGGCGcgucGCCGg -3'
miRNA:   3'- gcGCUGggCUCG-UUCGCGCUGC----UGGC- -5'
26699 5' -59.5 NC_005808.1 + 16649 0.66 0.446353
Target:  5'- aCGaCGGCUacaaGGuCAAGCGCGGCGACa- -3'
miRNA:   3'- -GC-GCUGGg---CUcGUUCGCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 22389 0.66 0.436831
Target:  5'- aGcCGGCCgCGGGCGcugccaagaccgAGgGCGACGACa- -3'
miRNA:   3'- gC-GCUGG-GCUCGU------------UCgCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 31526 0.66 0.427426
Target:  5'- gCGCGACCCggacacguucGAGCAGuucGuCGCcaauGCGGCCGa -3'
miRNA:   3'- -GCGCUGGG----------CUCGUU---C-GCGc---UGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 34909 0.66 0.475594
Target:  5'- aGcCGGCcgCCGAGguCAAGC-CGACGACCu -3'
miRNA:   3'- gC-GCUG--GGCUC--GUUCGcGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 37218 0.66 0.464759
Target:  5'- gCGCGcaccagugacauaACCCuGGGCGcGGUGCaGGCGGCCa -3'
miRNA:   3'- -GCGC-------------UGGG-CUCGU-UCGCG-CUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 4875 0.66 0.465739
Target:  5'- uCGUuGCCC-AGCGcGGCGaCGGCGGCCu -3'
miRNA:   3'- -GCGcUGGGcUCGU-UCGC-GCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 23569 0.66 0.465739
Target:  5'- uCGcCGGCaggugCGGGCGgggGGCGaCGAUGGCCGu -3'
miRNA:   3'- -GC-GCUGg----GCUCGU---UCGC-GCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 19874 0.66 0.455991
Target:  5'- gGCGugCCGAagGCGucGCGCGccuucuUGGCCGu -3'
miRNA:   3'- gCGCugGGCU--CGUu-CGCGCu-----GCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 2910 0.66 0.446353
Target:  5'- gCGCGcCCCGAuGUucGCGUucgaguucGACGGCCc -3'
miRNA:   3'- -GCGCuGGGCU-CGuuCGCG--------CUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 32914 0.66 0.475594
Target:  5'- uGCGGCCaCG-GCcuGCaCGGCGGCUGu -3'
miRNA:   3'- gCGCUGG-GCuCGuuCGcGCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 7352 0.66 0.474604
Target:  5'- gCGCGGCCucgaccucggcguCGuucguccagcGGCGGGCaccGCGGCGACCu -3'
miRNA:   3'- -GCGCUGG-------------GC----------UCGUUCG---CGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 18895 0.66 0.436831
Target:  5'- cCGCGACCUGGGCGcuaccGGCcuguacGUGuccggccCGACCGa -3'
miRNA:   3'- -GCGCUGGGCUCGU-----UCG------CGCu------GCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 16332 0.66 0.455991
Target:  5'- gCGCGAgCCGAcCAGGC-CGGCGGgugcCCGu -3'
miRNA:   3'- -GCGCUgGGCUcGUUCGcGCUGCU----GGC- -5'
26699 5' -59.5 NC_005808.1 + 1316 0.66 0.427426
Target:  5'- gGCGACggccaccaggCCGA-CAAGCGCGAgGaaGCCGu -3'
miRNA:   3'- gCGCUG----------GGCUcGUUCGCGCUgC--UGGC- -5'
26699 5' -59.5 NC_005808.1 + 27827 0.66 0.427426
Target:  5'- gCGCGcuGCCCGcGguGGCGC--CGGCCGc -3'
miRNA:   3'- -GCGC--UGGGCuCguUCGCGcuGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 29692 0.66 0.455991
Target:  5'- gCGCGG-CCGAGCGcaucgccaaAG-GCGACGACa- -3'
miRNA:   3'- -GCGCUgGGCUCGU---------UCgCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 41914 0.66 0.426492
Target:  5'- gGCG-CCCG-GCcGGCGCcgccguaGGCGGCCu -3'
miRNA:   3'- gCGCuGGGCuCGuUCGCG-------CUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 33962 0.66 0.474604
Target:  5'- gCGCGGCCUgGGGCGuuuccgaAGgGCGuacCGGCCa -3'
miRNA:   3'- -GCGCUGGG-CUCGU-------UCgCGCu--GCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.