miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26699 5' -59.5 NC_005808.1 + 21947 0.67 0.399948
Target:  5'- --aGGCCCaacgGGGCAcaguGCGCGgaACGACCGa -3'
miRNA:   3'- gcgCUGGG----CUCGUu---CGCGC--UGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 32680 0.69 0.31692
Target:  5'- aCGUGaaGCCCGAGCAGuucGC-CGACGugCu -3'
miRNA:   3'- -GCGC--UGGGCUCGUU---CGcGCUGCugGc -5'
26699 5' -59.5 NC_005808.1 + 36198 0.68 0.356741
Target:  5'- uCGaCGACaucaCCGAGgGcGcCGCGGCGGCCGa -3'
miRNA:   3'- -GC-GCUG----GGCUCgUuC-GCGCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 25597 0.68 0.362589
Target:  5'- uGCGGCCCaGGCAguggcaaccacggcGGCGCGGuCG-CCa -3'
miRNA:   3'- gCGCUGGGcUCGU--------------UCGCGCU-GCuGGc -5'
26699 5' -59.5 NC_005808.1 + 27418 0.68 0.365116
Target:  5'- uCGCGcGCCUGGcGCAccGCGCccGGCGGCCGc -3'
miRNA:   3'- -GCGC-UGGGCU-CGUu-CGCG--CUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 39656 0.67 0.373625
Target:  5'- uCGaCGugCCGcGCGAcGCgGUGugGGCCGg -3'
miRNA:   3'- -GC-GCugGGCuCGUU-CG-CGCugCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 8842 0.67 0.382268
Target:  5'- cCGCaACgCGGGCcAGCGCGuuGGCCu -3'
miRNA:   3'- -GCGcUGgGCUCGuUCGCGCugCUGGc -5'
26699 5' -59.5 NC_005808.1 + 22233 0.67 0.391043
Target:  5'- aCGCGGCCCuGGUugucGGcCGCGAUGGCg- -3'
miRNA:   3'- -GCGCUGGGcUCGu---UC-GCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 28788 0.67 0.396371
Target:  5'- uCGCGcuuGCCCugguugccgaucuuGAGCAgccAGCGCGccgucgucggguuGCGGCCGg -3'
miRNA:   3'- -GCGC---UGGG--------------CUCGU---UCGCGC-------------UGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 36112 0.69 0.309369
Target:  5'- gCGCGugaAUgCGGGCcuGCGCGGCGugCa -3'
miRNA:   3'- -GCGC---UGgGCUCGuuCGCGCUGCugGc -5'
26699 5' -59.5 NC_005808.1 + 24447 0.69 0.29396
Target:  5'- gCGCGGCCUcGGCGAcauugacGC-CGACGACCu -3'
miRNA:   3'- -GCGCUGGGcUCGUU-------CGcGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 28673 0.7 0.266945
Target:  5'- gGCGGCCUc-GCcAGCGCGGCGcGCCa -3'
miRNA:   3'- gCGCUGGGcuCGuUCGCGCUGC-UGGc -5'
26699 5' -59.5 NC_005808.1 + 3465 0.72 0.186278
Target:  5'- gCGCGcCCCGAuguucGCGGGCGaguuCGACGGCCc -3'
miRNA:   3'- -GCGCuGGGCU-----CGUUCGC----GCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 10936 0.71 0.212287
Target:  5'- uGCagGGCCuCGGGCAGuuGCGCGGCGACa- -3'
miRNA:   3'- gCG--CUGG-GCUCGUU--CGCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 42063 0.71 0.216168
Target:  5'- aGCGGCCCGcGCAcguccgagguauucGGCcaGCGAUGGCCc -3'
miRNA:   3'- gCGCUGGGCuCGU--------------UCG--CGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 32518 0.71 0.23529
Target:  5'- cCGCG-CCCGuGCAGGCugGUGAUG-CCGg -3'
miRNA:   3'- -GCGCuGGGCuCGUUCG--CGCUGCuGGC- -5'
26699 5' -59.5 NC_005808.1 + 11393 0.7 0.247558
Target:  5'- gGCGACCUGAuggGCcagggucuuGAGCaGCGGCGAgCCGg -3'
miRNA:   3'- gCGCUGGGCU---CG---------UUCG-CGCUGCU-GGC- -5'
26699 5' -59.5 NC_005808.1 + 39779 0.7 0.253887
Target:  5'- gCGUGGCCgCGAGCAccuGGCcCGACGaAUCGa -3'
miRNA:   3'- -GCGCUGG-GCUCGU---UCGcGCUGC-UGGC- -5'
26699 5' -59.5 NC_005808.1 + 22085 0.7 0.260349
Target:  5'- gCGCGGCUCGAu--GGCGUGAaUGACCGu -3'
miRNA:   3'- -GCGCUGGGCUcguUCGCGCU-GCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 15709 0.7 0.26628
Target:  5'- gGCGuccGCCUGGGCAucgaacuGGCGCGA-GGCCa -3'
miRNA:   3'- gCGC---UGGGCUCGU-------UCGCGCUgCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.