miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26699 5' -59.5 NC_005808.1 + 20543 1.08 0.000416
Target:  5'- cCGCGACCCGAGCAAGCGCGACGACCGc -3'
miRNA:   3'- -GCGCUGGGCUCGUUCGCGCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 37063 0.7 0.253887
Target:  5'- gGCGACCUGGGCGGaaccUG-GGCGGCCGg -3'
miRNA:   3'- gCGCUGGGCUCGUUc---GCgCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 14898 0.7 0.273675
Target:  5'- gGCGAgCCGcuGCcGGCGCG-CGGCCu -3'
miRNA:   3'- gCGCUgGGCu-CGuUCGCGCuGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 7352 0.66 0.474604
Target:  5'- gCGCGGCCucgaccucggcguCGuucguccagcGGCGGGCaccGCGGCGACCu -3'
miRNA:   3'- -GCGCUGG-------------GC----------UCGUUCG---CGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 2740 0.75 0.108154
Target:  5'- gCGCGGCCCG-GCGcugcucgGGCGUGcCGACCa -3'
miRNA:   3'- -GCGCUGGGCuCGU-------UCGCGCuGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 8733 0.75 0.121075
Target:  5'- uGUG-CCCG-GCGGGCGCGGCGcuACCGu -3'
miRNA:   3'- gCGCuGGGCuCGUUCGCGCUGC--UGGC- -5'
26699 5' -59.5 NC_005808.1 + 34541 0.74 0.142583
Target:  5'- aGCGACCUGGGCGcGCGUcaugGACGGCgGc -3'
miRNA:   3'- gCGCUGGGCUCGUuCGCG----CUGCUGgC- -5'
26699 5' -59.5 NC_005808.1 + 10232 0.74 0.146491
Target:  5'- gGCGGCCgGGGCcucgGCGGCGACCGc -3'
miRNA:   3'- gCGCUGGgCUCGuucgCGCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 16786 0.72 0.175284
Target:  5'- gGCGGCCCGGuGCAgaucaacgauaccgAGCGCGccgcgcgcaucGCGGCCa -3'
miRNA:   3'- gCGCUGGGCU-CGU--------------UCGCGC-----------UGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 26297 0.7 0.247558
Target:  5'- uCGCuuCCCGuGC--GCGaCGACGACCGg -3'
miRNA:   3'- -GCGcuGGGCuCGuuCGC-GCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 13138 0.72 0.189742
Target:  5'- gCGCGcuucgucgccugguGCCagGAGCAccugGGCGCGACGugCGa -3'
miRNA:   3'- -GCGC--------------UGGg-CUCGU----UCGCGCUGCugGC- -5'
26699 5' -59.5 NC_005808.1 + 9536 0.73 0.158809
Target:  5'- gCGCGACCCGAugAAGCGC-ACGACa- -3'
miRNA:   3'- -GCGCUGGGCUcgUUCGCGcUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 17931 0.8 0.05373
Target:  5'- aCGUGGCCCGcGGCGGGCGCGACaacACCa -3'
miRNA:   3'- -GCGCUGGGC-UCGUUCGCGCUGc--UGGc -5'
26699 5' -59.5 NC_005808.1 + 15171 0.71 0.221248
Target:  5'- uGCGGCcgCCGGGCGcggugcgccaggcGCGCGACGACUa -3'
miRNA:   3'- gCGCUG--GGCUCGUu------------CGCGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 13816 0.76 0.09441
Target:  5'- gGCaACCaGGGCAAGCGCGACG-CCGu -3'
miRNA:   3'- gCGcUGGgCUCGUUCGCGCUGCuGGC- -5'
26699 5' -59.5 NC_005808.1 + 31022 0.73 0.150497
Target:  5'- gGCGGCCCuGGGCGgcauGGCuuCGAUGACCGg -3'
miRNA:   3'- gCGCUGGG-CUCGU----UCGc-GCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 27331 0.71 0.22935
Target:  5'- gGCGACagCGGGCAAcuguuuGUGCGGCaGGCCGa -3'
miRNA:   3'- gCGCUGg-GCUCGUU------CGCGCUG-CUGGC- -5'
26699 5' -59.5 NC_005808.1 + 10259 0.7 0.273675
Target:  5'- aGCGACCUGGGCGGcgguuGuCGgGACG-CCGg -3'
miRNA:   3'- gCGCUGGGCUCGUU-----C-GCgCUGCuGGC- -5'
26699 5' -59.5 NC_005808.1 + 26727 0.76 0.099531
Target:  5'- aCGUG-CCCGAGCAacagaucGGCGCGugGcACCa -3'
miRNA:   3'- -GCGCuGGGCUCGU-------UCGCGCugC-UGGc -5'
26699 5' -59.5 NC_005808.1 + 13042 0.75 0.121075
Target:  5'- aCGCGAuacCCCGAGCAcGGCGUGgguguccucuGCGGCCa -3'
miRNA:   3'- -GCGCU---GGGCUCGU-UCGCGC----------UGCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.