miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26699 5' -59.5 NC_005808.1 + 33402 0.69 0.309369
Target:  5'- cCGCGcCgCCGAGCAGGCcaacguCGACGGCg- -3'
miRNA:   3'- -GCGCuG-GGCUCGUUCGc-----GCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 35359 0.69 0.287542
Target:  5'- gGCGGCCgacaucgccgaGGGUGAGCGCGGCGcagaugcuGCCGu -3'
miRNA:   3'- gCGCUGGg----------CUCGUUCGCGCUGC--------UGGC- -5'
26699 5' -59.5 NC_005808.1 + 16786 0.72 0.175284
Target:  5'- gGCGGCCCGGuGCAgaucaacgauaccgAGCGCGccgcgcgcaucGCGGCCa -3'
miRNA:   3'- gCGCUGGGCU-CGU--------------UCGCGC-----------UGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 2740 0.75 0.108154
Target:  5'- gCGCGGCCCG-GCGcugcucgGGCGUGcCGACCa -3'
miRNA:   3'- -GCGCUGGGCuCGU-------UCGCGCuGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 34394 0.67 0.391043
Target:  5'- gCGCGACUaCGAgGCcguGCGCGAUGaaaucGCCGg -3'
miRNA:   3'- -GCGCUGG-GCU-CGuu-CGCGCUGC-----UGGC- -5'
26699 5' -59.5 NC_005808.1 + 36061 0.68 0.356741
Target:  5'- gGCGAUUCGGGCGA---CGACGACCc -3'
miRNA:   3'- gCGCUGGGCUCGUUcgcGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 10259 0.7 0.273675
Target:  5'- aGCGACCUGGGCGGcgguuGuCGgGACG-CCGg -3'
miRNA:   3'- gCGCUGGGCUCGUU-----C-GCgCUGCuGGC- -5'
26699 5' -59.5 NC_005808.1 + 26727 0.76 0.099531
Target:  5'- aCGUG-CCCGAGCAacagaucGGCGCGugGcACCa -3'
miRNA:   3'- -GCGCuGGGCUCGU-------UCGCGCugC-UGGc -5'
26699 5' -59.5 NC_005808.1 + 14030 0.68 0.332436
Target:  5'- gGUGGCCgaCGuGCGcGcCGCGAUGGCCGg -3'
miRNA:   3'- gCGCUGG--GCuCGUuC-GCGCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 13816 0.76 0.09441
Target:  5'- gGCaACCaGGGCAAGCGCGACG-CCGu -3'
miRNA:   3'- gCGcUGGgCUCGUUCGCGCUGCuGGC- -5'
26699 5' -59.5 NC_005808.1 + 14898 0.7 0.273675
Target:  5'- gGCGAgCCGcuGCcGGCGCG-CGGCCu -3'
miRNA:   3'- gCGCUgGGCu-CGuUCGCGCuGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 14983 0.69 0.31692
Target:  5'- -cCGGCCCaucGuCAAGgGCGACGACCa -3'
miRNA:   3'- gcGCUGGGcu-C-GUUCgCGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 27331 0.71 0.22935
Target:  5'- gGCGACagCGGGCAAcuguuuGUGCGGCaGGCCGa -3'
miRNA:   3'- gCGCUGg-GCUCGUU------CGCGCUG-CUGGC- -5'
26699 5' -59.5 NC_005808.1 + 24466 0.72 0.176685
Target:  5'- gCGCGAgCCGGGCGacaAGUuCGACGuACCGg -3'
miRNA:   3'- -GCGCUgGGCUCGU---UCGcGCUGC-UGGC- -5'
26699 5' -59.5 NC_005808.1 + 10232 0.74 0.146491
Target:  5'- gGCGGCCgGGGCcucgGCGGCGACCGc -3'
miRNA:   3'- gCGCUGGgCUCGuucgCGCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 8733 0.75 0.121075
Target:  5'- uGUG-CCCG-GCGGGCGCGGCGcuACCGu -3'
miRNA:   3'- gCGCuGGGCuCGUUCGCGCUGC--UGGC- -5'
26699 5' -59.5 NC_005808.1 + 37819 0.67 0.418142
Target:  5'- gGCGugCUGGGCGcAGUGUgGGCGaacGCCGa -3'
miRNA:   3'- gCGCugGGCUCGU-UCGCG-CUGC---UGGC- -5'
26699 5' -59.5 NC_005808.1 + 8170 0.67 0.408982
Target:  5'- uGCGGCCCaGGaAGGCGCuGGCGuCCu -3'
miRNA:   3'- gCGCUGGGcUCgUUCGCG-CUGCuGGc -5'
26699 5' -59.5 NC_005808.1 + 12112 0.67 0.391043
Target:  5'- uCGaCGACUUucAGCAGGUgacGCGAUGACCGg -3'
miRNA:   3'- -GC-GCUGGGc-UCGUUCG---CGCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 31859 0.68 0.365116
Target:  5'- gCGCGcCCUuGGCGAGCagcaagGCGACGACg- -3'
miRNA:   3'- -GCGCuGGGcUCGUUCG------CGCUGCUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.