miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26699 5' -59.5 NC_005808.1 + 13574 0.67 0.391043
Target:  5'- -uCGACCUG-GCcgAAGCGCGGCGcCUGg -3'
miRNA:   3'- gcGCUGGGCuCG--UUCGCGCUGCuGGC- -5'
26699 5' -59.5 NC_005808.1 + 13816 0.76 0.09441
Target:  5'- gGCaACCaGGGCAAGCGCGACG-CCGu -3'
miRNA:   3'- gCGcUGGgCUCGUUCGCGCUGCuGGC- -5'
26699 5' -59.5 NC_005808.1 + 14030 0.68 0.332436
Target:  5'- gGUGGCCgaCGuGCGcGcCGCGAUGGCCGg -3'
miRNA:   3'- gCGCUGG--GCuCGUuC-GCGCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 14374 0.67 0.391043
Target:  5'- -cCGACCCGcGCGuggucgucGGCGUGGcCGACCu -3'
miRNA:   3'- gcGCUGGGCuCGU--------UCGCGCU-GCUGGc -5'
26699 5' -59.5 NC_005808.1 + 14767 0.68 0.324609
Target:  5'- gCGCGGCCggcgccaccgCGGGCAGcgcGCGCGAgGACg- -3'
miRNA:   3'- -GCGCUGG----------GCUCGUU---CGCGCUgCUGgc -5'
26699 5' -59.5 NC_005808.1 + 14898 0.7 0.273675
Target:  5'- gGCGAgCCGcuGCcGGCGCG-CGGCCu -3'
miRNA:   3'- gCGCUgGGCu-CGuUCGCGCuGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 14983 0.69 0.31692
Target:  5'- -cCGGCCCaucGuCAAGgGCGACGACCa -3'
miRNA:   3'- gcGCUGGGcu-C-GUUCgCGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 15171 0.71 0.221248
Target:  5'- uGCGGCcgCCGGGCGcggugcgccaggcGCGCGACGACUa -3'
miRNA:   3'- gCGCUG--GGCUCGUu------------CGCGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 15390 0.67 0.418142
Target:  5'- cCGCGugC-GGGCcGGCGaagaugccgGACGACCGa -3'
miRNA:   3'- -GCGCugGgCUCGuUCGCg--------CUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 15709 0.7 0.26628
Target:  5'- gGCGuccGCCUGGGCAucgaacuGGCGCGA-GGCCa -3'
miRNA:   3'- gCGC---UGGGCUCGU-------UCGCGCUgCUGGc -5'
26699 5' -59.5 NC_005808.1 + 16332 0.66 0.455991
Target:  5'- gCGCGAgCCGAcCAGGC-CGGCGGgugcCCGu -3'
miRNA:   3'- -GCGCUgGGCUcGUUCGcGCUGCU----GGC- -5'
26699 5' -59.5 NC_005808.1 + 16649 0.66 0.446353
Target:  5'- aCGaCGGCUacaaGGuCAAGCGCGGCGACa- -3'
miRNA:   3'- -GC-GCUGGg---CUcGUUCGCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 16786 0.72 0.175284
Target:  5'- gGCGGCCCGGuGCAgaucaacgauaccgAGCGCGccgcgcgcaucGCGGCCa -3'
miRNA:   3'- gCGCUGGGCU-CGU--------------UCGCGC-----------UGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 17931 0.8 0.05373
Target:  5'- aCGUGGCCCGcGGCGGGCGCGACaacACCa -3'
miRNA:   3'- -GCGCUGGGC-UCGUUCGCGCUGc--UGGc -5'
26699 5' -59.5 NC_005808.1 + 18895 0.66 0.436831
Target:  5'- cCGCGACCUGGGCGcuaccGGCcuguacGUGuccggccCGACCGa -3'
miRNA:   3'- -GCGCUGGGCUCGU-----UCG------CGCu------GCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 19874 0.66 0.455991
Target:  5'- gGCGugCCGAagGCGucGCGCGccuucuUGGCCGu -3'
miRNA:   3'- gCGCugGGCU--CGUu-CGCGCu-----GCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 20543 1.08 0.000416
Target:  5'- cCGCGACCCGAGCAAGCGCGACGACCGc -3'
miRNA:   3'- -GCGCUGGGCUCGUUCGCGCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 21835 0.67 0.408982
Target:  5'- gCGCGA--UGAGuCGAGCGCGGCGcagcGCCu -3'
miRNA:   3'- -GCGCUggGCUC-GUUCGCGCUGC----UGGc -5'
26699 5' -59.5 NC_005808.1 + 21947 0.67 0.399948
Target:  5'- --aGGCCCaacgGGGCAcaguGCGCGgaACGACCGa -3'
miRNA:   3'- gcgCUGGG----CUCGUu---CGCGC--UGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 22085 0.7 0.260349
Target:  5'- gCGCGGCUCGAu--GGCGUGAaUGACCGu -3'
miRNA:   3'- -GCGCUGGGCUcguUCGCGCU-GCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.