miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26699 5' -59.5 NC_005808.1 + 22233 0.67 0.391043
Target:  5'- aCGCGGCCCuGGUugucGGcCGCGAUGGCg- -3'
miRNA:   3'- -GCGCUGGGcUCGu---UC-GCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 22389 0.66 0.436831
Target:  5'- aGcCGGCCgCGGGCGcugccaagaccgAGgGCGACGACa- -3'
miRNA:   3'- gC-GCUGG-GCUCGU------------UCgCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 23569 0.66 0.465739
Target:  5'- uCGcCGGCaggugCGGGCGgggGGCGaCGAUGGCCGu -3'
miRNA:   3'- -GC-GCUGg----GCUCGU---UCGC-GCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 24447 0.69 0.29396
Target:  5'- gCGCGGCCUcGGCGAcauugacGC-CGACGACCu -3'
miRNA:   3'- -GCGCUGGGcUCGUU-------CGcGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 24466 0.72 0.176685
Target:  5'- gCGCGAgCCGGGCGacaAGUuCGACGuACCGg -3'
miRNA:   3'- -GCGCUgGGCUCGU---UCGcGCUGC-UGGC- -5'
26699 5' -59.5 NC_005808.1 + 25597 0.68 0.362589
Target:  5'- uGCGGCCCaGGCAguggcaaccacggcGGCGCGGuCG-CCa -3'
miRNA:   3'- gCGCUGGGcUCGU--------------UCGCGCU-GCuGGc -5'
26699 5' -59.5 NC_005808.1 + 26297 0.7 0.247558
Target:  5'- uCGCuuCCCGuGC--GCGaCGACGACCGg -3'
miRNA:   3'- -GCGcuGGGCuCGuuCGC-GCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 26600 0.69 0.301956
Target:  5'- gGCGACCUGucccuGC--GCGCGGCGcACCu -3'
miRNA:   3'- gCGCUGGGCu----CGuuCGCGCUGC-UGGc -5'
26699 5' -59.5 NC_005808.1 + 26727 0.76 0.099531
Target:  5'- aCGUG-CCCGAGCAacagaucGGCGCGugGcACCa -3'
miRNA:   3'- -GCGCuGGGCUCGU-------UCGCGCugC-UGGc -5'
26699 5' -59.5 NC_005808.1 + 27331 0.71 0.22935
Target:  5'- gGCGACagCGGGCAAcuguuuGUGCGGCaGGCCGa -3'
miRNA:   3'- gCGCUGg-GCUCGUU------CGCGCUG-CUGGC- -5'
26699 5' -59.5 NC_005808.1 + 27418 0.68 0.365116
Target:  5'- uCGCGcGCCUGGcGCAccGCGCccGGCGGCCGc -3'
miRNA:   3'- -GCGC-UGGGCU-CGUu-CGCG--CUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 27827 0.66 0.427426
Target:  5'- gCGCGcuGCCCGcGguGGCGC--CGGCCGc -3'
miRNA:   3'- -GCGC--UGGGCuCguUCGCGcuGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 28183 0.67 0.418142
Target:  5'- uGCccacGCCC-AGCAGGUGCGGCG-CCu -3'
miRNA:   3'- gCGc---UGGGcUCGUUCGCGCUGCuGGc -5'
26699 5' -59.5 NC_005808.1 + 28673 0.7 0.266945
Target:  5'- gGCGGCCUc-GCcAGCGCGGCGcGCCa -3'
miRNA:   3'- gCGCUGGGcuCGuUCGCGCUGC-UGGc -5'
26699 5' -59.5 NC_005808.1 + 28788 0.67 0.396371
Target:  5'- uCGCGcuuGCCCugguugccgaucuuGAGCAgccAGCGCGccgucgucggguuGCGGCCGg -3'
miRNA:   3'- -GCGC---UGGG--------------CUCGU---UCGCGC-------------UGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 29416 0.66 0.445396
Target:  5'- aCGcCGGCCaaGGGCGcccAGCGCGGCcgacacuGGCCGa -3'
miRNA:   3'- -GC-GCUGGg-CUCGU---UCGCGCUG-------CUGGC- -5'
26699 5' -59.5 NC_005808.1 + 29692 0.66 0.455991
Target:  5'- gCGCGG-CCGAGCGcaucgccaaAG-GCGACGACa- -3'
miRNA:   3'- -GCGCUgGGCUCGU---------UCgCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 30389 0.67 0.408982
Target:  5'- uGCGuCCCGAccagggGCAGGCaGCG-CgGGCCGg -3'
miRNA:   3'- gCGCuGGGCU------CGUUCG-CGCuG-CUGGC- -5'
26699 5' -59.5 NC_005808.1 + 31022 0.73 0.150497
Target:  5'- gGCGGCCCuGGGCGgcauGGCuuCGAUGACCGg -3'
miRNA:   3'- gCGCUGGG-CUCGU----UCGc-GCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 31317 0.67 0.418142
Target:  5'- gGUGGCCCG-GCuggaaucccAGGuCGCGGCGACa- -3'
miRNA:   3'- gCGCUGGGCuCG---------UUC-GCGCUGCUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.