Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26699 | 5' | -59.5 | NC_005808.1 | + | 21947 | 0.67 | 0.399948 |
Target: 5'- --aGGCCCaacgGGGCAcaguGCGCGgaACGACCGa -3' miRNA: 3'- gcgCUGGG----CUCGUu---CGCGC--UGCUGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 14374 | 0.67 | 0.391043 |
Target: 5'- -cCGACCCGcGCGuggucgucGGCGUGGcCGACCu -3' miRNA: 3'- gcGCUGGGCuCGU--------UCGCGCU-GCUGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 38028 | 0.67 | 0.399948 |
Target: 5'- gGCG-CaCCGAGC-AGCGCcucGGCGACUu -3' miRNA: 3'- gCGCuG-GGCUCGuUCGCG---CUGCUGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 34221 | 0.67 | 0.399948 |
Target: 5'- gGCGAuuCUCGAagauuCGAGCGCGGCGGCg- -3' miRNA: 3'- gCGCU--GGGCUc----GUUCGCGCUGCUGgc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 40831 | 0.67 | 0.408982 |
Target: 5'- -uCGGCCCGAcGCGccaGGCGCaGGcCGGCCa -3' miRNA: 3'- gcGCUGGGCU-CGU---UCGCG-CU-GCUGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 28183 | 0.67 | 0.418142 |
Target: 5'- uGCccacGCCC-AGCAGGUGCGGCG-CCu -3' miRNA: 3'- gCGc---UGGGcUCGUUCGCGCUGCuGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 31317 | 0.67 | 0.418142 |
Target: 5'- gGUGGCCCG-GCuggaaucccAGGuCGCGGCGACa- -3' miRNA: 3'- gCGCUGGGCuCG---------UUC-GCGCUGCUGgc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 41200 | 0.67 | 0.418142 |
Target: 5'- gGCGGCCaUGAGUGAaaccguuguGCGCGugG-CCGc -3' miRNA: 3'- gCGCUGG-GCUCGUU---------CGCGCugCuGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 15390 | 0.67 | 0.418142 |
Target: 5'- cCGCGugC-GGGCcGGCGaagaugccgGACGACCGa -3' miRNA: 3'- -GCGCugGgCUCGuUCGCg--------CUGCUGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 31859 | 0.68 | 0.365116 |
Target: 5'- gCGCGcCCUuGGCGAGCagcaagGCGACGACg- -3' miRNA: 3'- -GCGCuGGGcUCGUUCG------CGCUGCUGgc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 36061 | 0.68 | 0.356741 |
Target: 5'- gGCGAUUCGGGCGA---CGACGACCc -3' miRNA: 3'- gCGCUGGGCUCGUUcgcGCUGCUGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 36198 | 0.68 | 0.356741 |
Target: 5'- uCGaCGACaucaCCGAGgGcGcCGCGGCGGCCGa -3' miRNA: 3'- -GC-GCUG----GGCUCgUuC-GCGCUGCUGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 25597 | 0.68 | 0.362589 |
Target: 5'- uGCGGCCCaGGCAguggcaaccacggcGGCGCGGuCG-CCa -3' miRNA: 3'- gCGCUGGGcUCGU--------------UCGCGCU-GCuGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 27418 | 0.68 | 0.365116 |
Target: 5'- uCGCGcGCCUGGcGCAccGCGCccGGCGGCCGc -3' miRNA: 3'- -GCGC-UGGGCU-CGUu-CGCG--CUGCUGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 14767 | 0.68 | 0.324609 |
Target: 5'- gCGCGGCCggcgccaccgCGGGCAGcgcGCGCGAgGACg- -3' miRNA: 3'- -GCGCUGG----------GCUCGUU---CGCGCUgCUGgc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 33780 | 0.68 | 0.322288 |
Target: 5'- gGCuGGCCCGAcccaGCAgaucgguacugaccGGCGCGGcCGACCc -3' miRNA: 3'- gCG-CUGGGCU----CGU--------------UCGCGCU-GCUGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 14030 | 0.68 | 0.332436 |
Target: 5'- gGUGGCCgaCGuGCGcGcCGCGAUGGCCGg -3' miRNA: 3'- gCGCUGG--GCuCGUuC-GCGCUGCUGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 14983 | 0.69 | 0.31692 |
Target: 5'- -cCGGCCCaucGuCAAGgGCGACGACCa -3' miRNA: 3'- gcGCUGGGcu-C-GUUCgCGCUGCUGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 32680 | 0.69 | 0.31692 |
Target: 5'- aCGUGaaGCCCGAGCAGuucGC-CGACGugCu -3' miRNA: 3'- -GCGC--UGGGCUCGUU---CGcGCUGCugGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 36112 | 0.69 | 0.309369 |
Target: 5'- gCGCGugaAUgCGGGCcuGCGCGGCGugCa -3' miRNA: 3'- -GCGC---UGgGCUCGuuCGCGCUGCugGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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