miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26699 5' -59.5 NC_005808.1 + 34541 0.74 0.142583
Target:  5'- aGCGACCUGGGCGcGCGUcaugGACGGCgGc -3'
miRNA:   3'- gCGCUGGGCUCGUuCGCG----CUGCUGgC- -5'
26699 5' -59.5 NC_005808.1 + 34394 0.67 0.391043
Target:  5'- gCGCGACUaCGAgGCcguGCGCGAUGaaaucGCCGg -3'
miRNA:   3'- -GCGCUGG-GCU-CGuu-CGCGCUGC-----UGGC- -5'
26699 5' -59.5 NC_005808.1 + 34356 0.66 0.465739
Target:  5'- gGCcGCuuGAagcGCAAGCuGCuGACGGCCGc -3'
miRNA:   3'- gCGcUGggCU---CGUUCG-CG-CUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 34276 0.67 0.399948
Target:  5'- aCGCGcaacuuucCCCGAGC-AGCGCGcACcGCUGg -3'
miRNA:   3'- -GCGCu-------GGGCUCGuUCGCGC-UGcUGGC- -5'
26699 5' -59.5 NC_005808.1 + 34221 0.67 0.399948
Target:  5'- gGCGAuuCUCGAagauuCGAGCGCGGCGGCg- -3'
miRNA:   3'- gCGCU--GGGCUc----GUUCGCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 34069 0.67 0.373625
Target:  5'- uGCGAuaCCUGGGCAAGUucGCcGGCGACa- -3'
miRNA:   3'- gCGCU--GGGCUCGUUCG--CG-CUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 33962 0.66 0.474604
Target:  5'- gCGCGGCCUgGGGCGuuuccgaAGgGCGuacCGGCCa -3'
miRNA:   3'- -GCGCUGGG-CUCGU-------UCgCGCu--GCUGGc -5'
26699 5' -59.5 NC_005808.1 + 33780 0.68 0.322288
Target:  5'- gGCuGGCCCGAcccaGCAgaucgguacugaccGGCGCGGcCGACCc -3'
miRNA:   3'- gCG-CUGGGCU----CGU--------------UCGCGCU-GCUGGc -5'
26699 5' -59.5 NC_005808.1 + 33402 0.69 0.309369
Target:  5'- cCGCGcCgCCGAGCAGGCcaacguCGACGGCg- -3'
miRNA:   3'- -GCGCuG-GGCUCGUUCGc-----GCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 32914 0.66 0.475594
Target:  5'- uGCGGCCaCG-GCcuGCaCGGCGGCUGu -3'
miRNA:   3'- gCGCUGG-GCuCGuuCGcGCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 32680 0.69 0.31692
Target:  5'- aCGUGaaGCCCGAGCAGuucGC-CGACGugCu -3'
miRNA:   3'- -GCGC--UGGGCUCGUU---CGcGCUGCugGc -5'
26699 5' -59.5 NC_005808.1 + 32518 0.71 0.23529
Target:  5'- cCGCG-CCCGuGCAGGCugGUGAUG-CCGg -3'
miRNA:   3'- -GCGCuGGGCuCGUUCG--CGCUGCuGGC- -5'
26699 5' -59.5 NC_005808.1 + 31859 0.68 0.365116
Target:  5'- gCGCGcCCUuGGCGAGCagcaagGCGACGACg- -3'
miRNA:   3'- -GCGCuGGGcUCGUUCG------CGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 31526 0.66 0.427426
Target:  5'- gCGCGACCCggacacguucGAGCAGuucGuCGCcaauGCGGCCGa -3'
miRNA:   3'- -GCGCUGGG----------CUCGUU---C-GCGc---UGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 31317 0.67 0.418142
Target:  5'- gGUGGCCCG-GCuggaaucccAGGuCGCGGCGACa- -3'
miRNA:   3'- gCGCUGGGCuCG---------UUC-GCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 31022 0.73 0.150497
Target:  5'- gGCGGCCCuGGGCGgcauGGCuuCGAUGACCGg -3'
miRNA:   3'- gCGCUGGG-CUCGU----UCGc-GCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 30389 0.67 0.408982
Target:  5'- uGCGuCCCGAccagggGCAGGCaGCG-CgGGCCGg -3'
miRNA:   3'- gCGCuGGGCU------CGUUCG-CGCuG-CUGGC- -5'
26699 5' -59.5 NC_005808.1 + 29692 0.66 0.455991
Target:  5'- gCGCGG-CCGAGCGcaucgccaaAG-GCGACGACa- -3'
miRNA:   3'- -GCGCUgGGCUCGU---------UCgCGCUGCUGgc -5'
26699 5' -59.5 NC_005808.1 + 29416 0.66 0.445396
Target:  5'- aCGcCGGCCaaGGGCGcccAGCGCGGCcgacacuGGCCGa -3'
miRNA:   3'- -GC-GCUGGg-CUCGU---UCGCGCUG-------CUGGC- -5'
26699 5' -59.5 NC_005808.1 + 28788 0.67 0.396371
Target:  5'- uCGCGcuuGCCCugguugccgaucuuGAGCAgccAGCGCGccgucgucggguuGCGGCCGg -3'
miRNA:   3'- -GCGC---UGGG--------------CUCGU---UCGCGC-------------UGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.