miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26699 5' -59.5 NC_005808.1 + 42403 0.66 0.465739
Target:  5'- cCGUGucGCCCG-GC-AGCGUGACGguGCCc -3'
miRNA:   3'- -GCGC--UGGGCuCGuUCGCGCUGC--UGGc -5'
26699 5' -59.5 NC_005808.1 + 42063 0.71 0.216168
Target:  5'- aGCGGCCCGcGCAcguccgagguauucGGCcaGCGAUGGCCc -3'
miRNA:   3'- gCGCUGGGCuCGU--------------UCG--CGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 41914 0.66 0.426492
Target:  5'- gGCG-CCCG-GCcGGCGCcgccguaGGCGGCCu -3'
miRNA:   3'- gCGCuGGGCuCGuUCGCG-------CUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 41789 0.66 0.446353
Target:  5'- -uCGGCaaGGGCuGGGCGCGGCGcgucGCCGg -3'
miRNA:   3'- gcGCUGggCUCG-UUCGCGCUGC----UGGC- -5'
26699 5' -59.5 NC_005808.1 + 41647 0.66 0.427426
Target:  5'- aCGUGGCUCGAcacGCAgAGCGUGGagaauuCGACCa -3'
miRNA:   3'- -GCGCUGGGCU---CGU-UCGCGCU------GCUGGc -5'
26699 5' -59.5 NC_005808.1 + 41421 0.66 0.472626
Target:  5'- gGcCGACCCcGGCGgcgagacuauguggGGCGUGACcGCCGc -3'
miRNA:   3'- gC-GCUGGGcUCGU--------------UCGCGCUGcUGGC- -5'
26699 5' -59.5 NC_005808.1 + 41200 0.67 0.418142
Target:  5'- gGCGGCCaUGAGUGAaaccguuguGCGCGugG-CCGc -3'
miRNA:   3'- gCGCUGG-GCUCGUU---------CGCGCugCuGGC- -5'
26699 5' -59.5 NC_005808.1 + 40831 0.67 0.408982
Target:  5'- -uCGGCCCGAcGCGccaGGCGCaGGcCGGCCa -3'
miRNA:   3'- gcGCUGGGCU-CGU---UCGCG-CU-GCUGGc -5'
26699 5' -59.5 NC_005808.1 + 40363 0.66 0.465739
Target:  5'- gCGCGGCCaCGcGCcgccugcuGCGCGugGugCu -3'
miRNA:   3'- -GCGCUGG-GCuCGuu------CGCGCugCugGc -5'
26699 5' -59.5 NC_005808.1 + 39779 0.7 0.253887
Target:  5'- gCGUGGCCgCGAGCAccuGGCcCGACGaAUCGa -3'
miRNA:   3'- -GCGCUGG-GCUCGU---UCGcGCUGC-UGGC- -5'
26699 5' -59.5 NC_005808.1 + 39656 0.67 0.373625
Target:  5'- uCGaCGugCCGcGCGAcGCgGUGugGGCCGg -3'
miRNA:   3'- -GC-GCugGGCuCGUU-CG-CGCugCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 38028 0.67 0.399948
Target:  5'- gGCG-CaCCGAGC-AGCGCcucGGCGACUu -3'
miRNA:   3'- gCGCuG-GGCUCGuUCGCG---CUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 37819 0.67 0.418142
Target:  5'- gGCGugCUGGGCGcAGUGUgGGCGaacGCCGa -3'
miRNA:   3'- gCGCugGGCUCGU-UCGCG-CUGC---UGGC- -5'
26699 5' -59.5 NC_005808.1 + 37218 0.66 0.464759
Target:  5'- gCGCGcaccagugacauaACCCuGGGCGcGGUGCaGGCGGCCa -3'
miRNA:   3'- -GCGC-------------UGGG-CUCGU-UCGCG-CUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 37063 0.7 0.253887
Target:  5'- gGCGACCUGGGCGGaaccUG-GGCGGCCGg -3'
miRNA:   3'- gCGCUGGGCUCGUUc---GCgCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 36198 0.68 0.356741
Target:  5'- uCGaCGACaucaCCGAGgGcGcCGCGGCGGCCGa -3'
miRNA:   3'- -GC-GCUG----GGCUCgUuC-GCGCUGCUGGC- -5'
26699 5' -59.5 NC_005808.1 + 36112 0.69 0.309369
Target:  5'- gCGCGugaAUgCGGGCcuGCGCGGCGugCa -3'
miRNA:   3'- -GCGC---UGgGCUCGuuCGCGCUGCugGc -5'
26699 5' -59.5 NC_005808.1 + 36061 0.68 0.356741
Target:  5'- gGCGAUUCGGGCGA---CGACGACCc -3'
miRNA:   3'- gCGCUGGGCUCGUUcgcGCUGCUGGc -5'
26699 5' -59.5 NC_005808.1 + 35359 0.69 0.287542
Target:  5'- gGCGGCCgacaucgccgaGGGUGAGCGCGGCGcagaugcuGCCGu -3'
miRNA:   3'- gCGCUGGg----------CUCGUUCGCGCUGC--------UGGC- -5'
26699 5' -59.5 NC_005808.1 + 34909 0.66 0.475594
Target:  5'- aGcCGGCcgCCGAGguCAAGC-CGACGACCu -3'
miRNA:   3'- gC-GCUG--GGCUC--GUUCGcGCUGCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.