miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
267 5' -52.4 AC_000008.1 + 22258 0.69 0.570707
Target:  5'- gCCugc-GGAAGCUuuccuuucGCAGC-GCCGCCu -3'
miRNA:   3'- -GGuuuuUCUUCGA--------CGUCGaCGGCGGc -5'
267 5' -52.4 AC_000008.1 + 20667 0.7 0.491883
Target:  5'- gCAGc-GGggGCgGCAGCUucgGCCGCUGc -3'
miRNA:   3'- gGUUuuUCuuCGaCGUCGA---CGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 9189 0.74 0.285827
Target:  5'- ---------cGCUGCcGCUGCCGCCGg -3'
miRNA:   3'- gguuuuucuuCGACGuCGACGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 9731 0.75 0.270876
Target:  5'- gCCAuccuGGGAAGCaagggcccGCGGCUGCUGCUGa -3'
miRNA:   3'- -GGUuu--UUCUUCGa-------CGUCGACGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 25091 0.76 0.223482
Target:  5'- gCCAAAA--AAGCUagcGCAGCaGCCGCCGc -3'
miRNA:   3'- -GGUUUUucUUCGA---CGUCGaCGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 20822 0.67 0.640536
Target:  5'- gCCAcu-----GCUGUuGCUGCCGCCu -3'
miRNA:   3'- -GGUuuuucuuCGACGuCGACGGCGGc -5'
267 5' -52.4 AC_000008.1 + 24771 0.67 0.652211
Target:  5'- gUAGGAGGAGGggagggugccCUGCAuGuCUGCCGCUGc -3'
miRNA:   3'- gGUUUUUCUUC----------GACGU-C-GACGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 25994 0.66 0.743773
Target:  5'- gUCAAAAcGAAGcCUGgGGCaugGCCGaCCGc -3'
miRNA:   3'- -GGUUUUuCUUC-GACgUCGa--CGGC-GGC- -5'
267 5' -52.4 AC_000008.1 + 30395 0.66 0.743773
Target:  5'- uCCAAGGGcAAGCUGCGcGCcaaggGCCacGCCGc -3'
miRNA:   3'- -GGUUUUUcUUCGACGU-CGa----CGG--CGGC- -5'
267 5' -52.4 AC_000008.1 + 33694 0.66 0.721374
Target:  5'- uCCAu--GGGcuCUGCucCUGCCGCCGc -3'
miRNA:   3'- -GGUuuuUCUucGACGucGACGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 23177 0.66 0.721374
Target:  5'- aCCAugGAGcccAGGUUGCccuGCUGCUGCgCGc -3'
miRNA:   3'- -GGUuuUUC---UUCGACGu--CGACGGCG-GC- -5'
267 5' -52.4 AC_000008.1 + 5529 0.66 0.721374
Target:  5'- gUggGgcGAGGCUGauuGGCUgggacaaaGCCGCCGg -3'
miRNA:   3'- gGuuUuuCUUCGACg--UCGA--------CGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 12523 0.66 0.710018
Target:  5'- aCCAAGuGGAAGCUcUGGCgGCCGUa- -3'
miRNA:   3'- -GGUUUuUCUUCGAcGUCGaCGGCGgc -5'
267 5' -52.4 AC_000008.1 + 24830 0.67 0.675485
Target:  5'- -aGGAGGGggGC-GCAuCUGCCGCa- -3'
miRNA:   3'- ggUUUUUCuuCGaCGUcGACGGCGgc -5'
267 5' -52.4 AC_000008.1 + 23255 0.67 0.652211
Target:  5'- uCCAGGuu--GGuCUGCAcGUUGCCGCUGu -3'
miRNA:   3'- -GGUUUuucuUC-GACGU-CGACGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 23432 0.81 0.101739
Target:  5'- gCGGAGAGccgguuGGcCUGCGGCUGCUGCCGg -3'
miRNA:   3'- gGUUUUUCu-----UC-GACGUCGACGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.