miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
267 5' -52.4 AC_000008.1 + 26175 1.11 0.00078
Target:  5'- cCCAAAAAGAAGCUGCAGCUGCCGCCGc -3'
miRNA:   3'- -GGUUUUUCUUCGACGUCGACGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 13761 0.66 0.748195
Target:  5'- gCGAGGAGGAguaccuaaacaacucGCUGCuGCaGCCGCa- -3'
miRNA:   3'- gGUUUUUCUU---------------CGACGuCGaCGGCGgc -5'
267 5' -52.4 AC_000008.1 + 13658 0.66 0.743773
Target:  5'- uCCGAucuAGgcGCUGCGGCc-CCGCgGu -3'
miRNA:   3'- -GGUUuu-UCuuCGACGUCGacGGCGgC- -5'
267 5' -52.4 AC_000008.1 + 10774 0.66 0.743773
Target:  5'- uCCuuccAGgcGCgGCGGCUGCUGCg- -3'
miRNA:   3'- -GGuuuuUCuuCGaCGUCGACGGCGgc -5'
267 5' -52.4 AC_000008.1 + 33188 0.66 0.737102
Target:  5'- aUCAGGAuaGGGcggugguGCUGCAGCagcgcgcgaauaaacUGCUGCCGc -3'
miRNA:   3'- -GGUUUU--UCUu------CGACGUCG---------------ACGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 26803 0.67 0.652211
Target:  5'- gCAGGAGGAGgagcGCUGCGuCUGgCGCCc -3'
miRNA:   3'- gGUUUUUCUU----CGACGUcGACgGCGGc -5'
267 5' -52.4 AC_000008.1 + 10335 0.69 0.525136
Target:  5'- aCCAAAAAGu-GCgGCGGCgGCUGgCGg -3'
miRNA:   3'- -GGUUUUUCuuCGaCGUCGaCGGCgGC- -5'
267 5' -52.4 AC_000008.1 + 2167 0.7 0.491883
Target:  5'- gCAGGAGGAAGCcagGCGGCgGCgGCa- -3'
miRNA:   3'- gGUUUUUCUUCGa--CGUCGaCGgCGgc -5'
267 5' -52.4 AC_000008.1 + 26475 0.7 0.481013
Target:  5'- aCCAGGGccGGuAAGUccaaGCAGCcGCCGCCGu -3'
miRNA:   3'- -GGUUUU--UC-UUCGa---CGUCGaCGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 1967 0.71 0.438771
Target:  5'- aCCGGGgcGc-GCUGCGGCUGCUGuuGc -3'
miRNA:   3'- -GGUUUuuCuuCGACGUCGACGGCggC- -5'
267 5' -52.4 AC_000008.1 + 4962 0.83 0.072865
Target:  5'- --uAAGAG-AGCUGCAGCUGCCGUCa -3'
miRNA:   3'- gguUUUUCuUCGACGUCGACGGCGGc -5'
267 5' -52.4 AC_000008.1 + 31332 0.76 0.205424
Target:  5'- aCCuc--AGAAGCccuaacUGUGGCUGCCGCCGc -3'
miRNA:   3'- -GGuuuuUCUUCG------ACGUCGACGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 18783 0.76 0.223482
Target:  5'- gCCA--GAGGAGCUGCuGa-GCCGCCGc -3'
miRNA:   3'- -GGUuuUUCUUCGACGuCgaCGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 15182 0.74 0.296675
Target:  5'- gCUGAGGAGAAGCgcgcugagGCcgaagcagcggccgaAGCUGCCGCCc -3'
miRNA:   3'- -GGUUUUUCUUCGa-------CG---------------UCGACGGCGGc -5'
267 5' -52.4 AC_000008.1 + 21674 0.74 0.299041
Target:  5'- aCAuAAAGAAGCaagcaacaucaacaaCAGCUGCCGCCa -3'
miRNA:   3'- gGUuUUUCUUCGac-------------GUCGACGGCGGc -5'
267 5' -52.4 AC_000008.1 + 8663 0.74 0.301421
Target:  5'- gCGGGcAGGAGCUGguGCUGCgCGCg- -3'
miRNA:   3'- gGUUUuUCUUCGACguCGACG-GCGgc -5'
267 5' -52.4 AC_000008.1 + 3770 0.73 0.326029
Target:  5'- gCCGuu--GGAGaCUGCAGCcuccGCCGCCGc -3'
miRNA:   3'- -GGUuuuuCUUC-GACGUCGa---CGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 23432 0.81 0.101739
Target:  5'- gCGGAGAGccgguuGGcCUGCGGCUGCUGCCGg -3'
miRNA:   3'- gGUUUUUCu-----UC-GACGUCGACGGCGGC- -5'
267 5' -52.4 AC_000008.1 + 30395 0.66 0.743773
Target:  5'- uCCAAGGGcAAGCUGCGcGCcaaggGCCacGCCGc -3'
miRNA:   3'- -GGUUUUUcUUCGACGU-CGa----CGG--CGGC- -5'
267 5' -52.4 AC_000008.1 + 33694 0.66 0.721374
Target:  5'- uCCAu--GGGcuCUGCucCUGCCGCCGc -3'
miRNA:   3'- -GGUuuuUCUucGACGucGACGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.