Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
267 | 5' | -52.4 | AC_000008.1 | + | 1967 | 0.71 | 0.438771 |
Target: 5'- aCCGGGgcGc-GCUGCGGCUGCUGuuGc -3' miRNA: 3'- -GGUUUuuCuuCGACGUCGACGGCggC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 2167 | 0.7 | 0.491883 |
Target: 5'- gCAGGAGGAAGCcagGCGGCgGCgGCa- -3' miRNA: 3'- gGUUUUUCUUCGa--CGUCGaCGgCGgc -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 3770 | 0.73 | 0.326029 |
Target: 5'- gCCGuu--GGAGaCUGCAGCcuccGCCGCCGc -3' miRNA: 3'- -GGUuuuuCUUC-GACGUCGa---CGGCGGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 4962 | 0.83 | 0.072865 |
Target: 5'- --uAAGAG-AGCUGCAGCUGCCGUCa -3' miRNA: 3'- gguUUUUCuUCGACGUCGACGGCGGc -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 5529 | 0.66 | 0.721374 |
Target: 5'- gUggGgcGAGGCUGauuGGCUgggacaaaGCCGCCGg -3' miRNA: 3'- gGuuUuuCUUCGACg--UCGA--------CGGCGGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 8663 | 0.74 | 0.301421 |
Target: 5'- gCGGGcAGGAGCUGguGCUGCgCGCg- -3' miRNA: 3'- gGUUUuUCUUCGACguCGACG-GCGgc -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 9076 | 0.68 | 0.582263 |
Target: 5'- gCCAGAcgc-AGCgcuccuccuccUGCuGCUGCCGCCGc -3' miRNA: 3'- -GGUUUuucuUCG-----------ACGuCGACGGCGGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 9189 | 0.74 | 0.285827 |
Target: 5'- ---------cGCUGCcGCUGCCGCCGg -3' miRNA: 3'- gguuuuucuuCGACGuCGACGGCGGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 9731 | 0.75 | 0.270876 |
Target: 5'- gCCAuccuGGGAAGCaagggcccGCGGCUGCUGCUGa -3' miRNA: 3'- -GGUuu--UUCUUCGa-------CGUCGACGGCGGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 10335 | 0.69 | 0.525136 |
Target: 5'- aCCAAAAAGu-GCgGCGGCgGCUGgCGg -3' miRNA: 3'- -GGUUUUUCuuCGaCGUCGaCGGCgGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 10774 | 0.66 | 0.743773 |
Target: 5'- uCCuuccAGgcGCgGCGGCUGCUGCg- -3' miRNA: 3'- -GGuuuuUCuuCGaCGUCGACGGCGgc -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 12523 | 0.66 | 0.710018 |
Target: 5'- aCCAAGuGGAAGCUcUGGCgGCCGUa- -3' miRNA: 3'- -GGUUUuUCUUCGAcGUCGaCGGCGgc -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 13658 | 0.66 | 0.743773 |
Target: 5'- uCCGAucuAGgcGCUGCGGCc-CCGCgGu -3' miRNA: 3'- -GGUUuu-UCuuCGACGUCGacGGCGgC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 13761 | 0.66 | 0.748195 |
Target: 5'- gCGAGGAGGAguaccuaaacaacucGCUGCuGCaGCCGCa- -3' miRNA: 3'- gGUUUUUCUU---------------CGACGuCGaCGGCGgc -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 15182 | 0.74 | 0.296675 |
Target: 5'- gCUGAGGAGAAGCgcgcugagGCcgaagcagcggccgaAGCUGCCGCCc -3' miRNA: 3'- -GGUUUUUCUUCGa-------CG---------------UCGACGGCGGc -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 18783 | 0.76 | 0.223482 |
Target: 5'- gCCA--GAGGAGCUGCuGa-GCCGCCGc -3' miRNA: 3'- -GGUuuUUCUUCGACGuCgaCGGCGGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 19549 | 0.68 | 0.593867 |
Target: 5'- gCCGc--GGcuGCUGCGGCgGCCGCuCGu -3' miRNA: 3'- -GGUuuuUCuuCGACGUCGaCGGCG-GC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 20667 | 0.7 | 0.491883 |
Target: 5'- gCAGc-GGggGCgGCAGCUucgGCCGCUGc -3' miRNA: 3'- gGUUuuUCuuCGaCGUCGA---CGGCGGC- -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 20822 | 0.67 | 0.640536 |
Target: 5'- gCCAcu-----GCUGUuGCUGCCGCCu -3' miRNA: 3'- -GGUuuuucuuCGACGuCGACGGCGGc -5' |
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267 | 5' | -52.4 | AC_000008.1 | + | 21674 | 0.74 | 0.299041 |
Target: 5'- aCAuAAAGAAGCaagcaacaucaacaaCAGCUGCCGCCa -3' miRNA: 3'- gGUuUUUCUUCGac-------------GUCGACGGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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