miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26701 3' -53 NC_005808.1 + 6254 0.66 0.780615
Target:  5'- cCGguAACggUGCgGUUgaucugCGCGCUGGGc -3'
miRNA:   3'- cGCguUUG--ACGaCGAaa----GCGCGACCC- -5'
26701 3' -53 NC_005808.1 + 14794 0.66 0.780615
Target:  5'- cGCGCGAggacguGCUGCgGCUgcgcggCGCGCg--- -3'
miRNA:   3'- -CGCGUU------UGACGaCGAaa----GCGCGaccc -5'
26701 3' -53 NC_005808.1 + 5149 0.66 0.780615
Target:  5'- cGCGCAGGCggccgucGCUGCUcaCGCccuugGCgaGGGu -3'
miRNA:   3'- -CGCGUUUGa------CGACGAaaGCG-----CGa-CCC- -5'
26701 3' -53 NC_005808.1 + 33931 0.66 0.773336
Target:  5'- cGCGCAgcAGCcGCUGCacacagcgaguacggCGCGgcCUGGGg -3'
miRNA:   3'- -CGCGU--UUGaCGACGaaa------------GCGC--GACCC- -5'
26701 3' -53 NC_005808.1 + 20652 0.66 0.770193
Target:  5'- cGCGC--ACUG-UGCc--CGCGUUGGGc -3'
miRNA:   3'- -CGCGuuUGACgACGaaaGCGCGACCC- -5'
26701 3' -53 NC_005808.1 + 29201 0.66 0.770193
Target:  5'- cCGCAAcgaUGCcGCcuacaaccgCGCGCUGGGc -3'
miRNA:   3'- cGCGUUug-ACGaCGaaa------GCGCGACCC- -5'
26701 3' -53 NC_005808.1 + 14427 0.66 0.770193
Target:  5'- gGCGCGc-CUGCgGCac-CGUGUUGGGc -3'
miRNA:   3'- -CGCGUuuGACGaCGaaaGCGCGACCC- -5'
26701 3' -53 NC_005808.1 + 14895 0.66 0.759617
Target:  5'- gGCgGCGAGCcGCUGCcggCGCGC-GGc -3'
miRNA:   3'- -CG-CGUUUGaCGACGaaaGCGCGaCCc -5'
26701 3' -53 NC_005808.1 + 15126 0.66 0.759617
Target:  5'- uCGCGuGgUGCgUGCgcggCGCGCUGGc -3'
miRNA:   3'- cGCGUuUgACG-ACGaaa-GCGCGACCc -5'
26701 3' -53 NC_005808.1 + 4382 0.66 0.759617
Target:  5'- uGCGCAGcCagGC-GCcgUCGCGCcGGGc -3'
miRNA:   3'- -CGCGUUuGa-CGaCGaaAGCGCGaCCC- -5'
26701 3' -53 NC_005808.1 + 31007 0.66 0.756416
Target:  5'- cGCGCGAcCUGUccacggGCUUgccggccgaggcaaUCGCGC-GGGc -3'
miRNA:   3'- -CGCGUUuGACGa-----CGAA--------------AGCGCGaCCC- -5'
26701 3' -53 NC_005808.1 + 31097 0.67 0.716035
Target:  5'- aGCGCAGGC-GCUGCccUUUGCGgUGu- -3'
miRNA:   3'- -CGCGUUUGaCGACGa-AAGCGCgACcc -5'
26701 3' -53 NC_005808.1 + 11262 0.67 0.716035
Target:  5'- aGgGUuuGC-GCUGCg---GCGCUGGGa -3'
miRNA:   3'- -CgCGuuUGaCGACGaaagCGCGACCC- -5'
26701 3' -53 NC_005808.1 + 25783 0.67 0.716035
Target:  5'- cGCGUGAACUGC-GC---CGC-CUGGGc -3'
miRNA:   3'- -CGCGUUUGACGaCGaaaGCGcGACCC- -5'
26701 3' -53 NC_005808.1 + 19412 0.67 0.716035
Target:  5'- gGC-CGAcCUGCUGCUgUCGCaccaGCaGGGg -3'
miRNA:   3'- -CGcGUUuGACGACGAaAGCG----CGaCCC- -5'
26701 3' -53 NC_005808.1 + 42199 0.67 0.704884
Target:  5'- cCGCcguGCUGCUGgUgggCGCcCUGGGc -3'
miRNA:   3'- cGCGuu-UGACGACgAaa-GCGcGACCC- -5'
26701 3' -53 NC_005808.1 + 32008 0.67 0.693656
Target:  5'- gGUGCAGGCUGCg-----CGC-CUGGGu -3'
miRNA:   3'- -CGCGUUUGACGacgaaaGCGcGACCC- -5'
26701 3' -53 NC_005808.1 + 23012 0.67 0.693656
Target:  5'- -gGCcuGCUGCUGCgccUGCuGUUGGGc -3'
miRNA:   3'- cgCGuuUGACGACGaaaGCG-CGACCC- -5'
26701 3' -53 NC_005808.1 + 22855 0.67 0.693656
Target:  5'- aGCGCGcGCUGCgaauuggGCUgcuucuggUUCGCGC-GGu -3'
miRNA:   3'- -CGCGUuUGACGa------CGA--------AAGCGCGaCCc -5'
26701 3' -53 NC_005808.1 + 7001 0.67 0.671021
Target:  5'- cGCGCGAGCggGUcgGC--UCGCGUgaUGGGc -3'
miRNA:   3'- -CGCGUUUGa-CGa-CGaaAGCGCG--ACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.