Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26701 | 3' | -53 | NC_005808.1 | + | 35387 | 0.71 | 0.480833 |
Target: 5'- gGCGCAGA-UGCUGCcguggacaUCGCGCUGu- -3' miRNA: 3'- -CGCGUUUgACGACGaa------AGCGCGACcc -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 20652 | 0.66 | 0.770193 |
Target: 5'- cGCGC--ACUG-UGCc--CGCGUUGGGc -3' miRNA: 3'- -CGCGuuUGACgACGaaaGCGCGACCC- -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 5149 | 0.66 | 0.780615 |
Target: 5'- cGCGCAGGCggccgucGCUGCUcaCGCccuugGCgaGGGu -3' miRNA: 3'- -CGCGUUUGa------CGACGAaaGCG-----CGa-CCC- -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 14794 | 0.66 | 0.780615 |
Target: 5'- cGCGCGAggacguGCUGCgGCUgcgcggCGCGCg--- -3' miRNA: 3'- -CGCGUU------UGACGaCGAaa----GCGCGaccc -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 32788 | 0.69 | 0.5584 |
Target: 5'- uGCGCAAAC-GCUGCUUgacugguucggcgugCGCGacCUGGc -3' miRNA: 3'- -CGCGUUUGaCGACGAAa--------------GCGC--GACCc -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 7905 | 0.68 | 0.636801 |
Target: 5'- uGCGUAGAUcgccaGCUGCUcgUUGCGCUcGGc -3' miRNA: 3'- -CGCGUUUGa----CGACGAa-AGCGCGAcCC- -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 7001 | 0.67 | 0.671021 |
Target: 5'- cGCGCGAGCggGUcgGC--UCGCGUgaUGGGc -3' miRNA: 3'- -CGCGUUUGa-CGa-CGaaAGCGCG--ACCC- -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 32008 | 0.67 | 0.693656 |
Target: 5'- gGUGCAGGCUGCg-----CGC-CUGGGu -3' miRNA: 3'- -CGCGUUUGACGacgaaaGCGcGACCC- -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 31097 | 0.67 | 0.716035 |
Target: 5'- aGCGCAGGC-GCUGCccUUUGCGgUGu- -3' miRNA: 3'- -CGCGUUUGaCGACGa-AAGCGCgACcc -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 15126 | 0.66 | 0.759617 |
Target: 5'- uCGCGuGgUGCgUGCgcggCGCGCUGGc -3' miRNA: 3'- cGCGUuUgACG-ACGaaa-GCGCGACCc -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 25783 | 0.67 | 0.716035 |
Target: 5'- cGCGUGAACUGC-GC---CGC-CUGGGc -3' miRNA: 3'- -CGCGUUUGACGaCGaaaGCGcGACCC- -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 19412 | 0.67 | 0.716035 |
Target: 5'- gGC-CGAcCUGCUGCUgUCGCaccaGCaGGGg -3' miRNA: 3'- -CGcGUUuGACGACGAaAGCG----CGaCCC- -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 19977 | 0.7 | 0.502203 |
Target: 5'- -aGCGAcuacCUGCUGCcg-CGCGCgGGGc -3' miRNA: 3'- cgCGUUu---GACGACGaaaGCGCGaCCC- -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 14895 | 0.66 | 0.759617 |
Target: 5'- gGCgGCGAGCcGCUGCcggCGCGC-GGc -3' miRNA: 3'- -CG-CGUUUGaCGACGaaaGCGCGaCCc -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 28827 | 0.7 | 0.513043 |
Target: 5'- cGCGCAcaaGAUUGC-GCUcaugUCgGCGCUGGa -3' miRNA: 3'- -CGCGU---UUGACGaCGAa---AG-CGCGACCc -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 42199 | 0.67 | 0.704884 |
Target: 5'- cCGCcguGCUGCUGgUgggCGCcCUGGGc -3' miRNA: 3'- cGCGuu-UGACGACgAaa-GCGcGACCC- -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 4382 | 0.66 | 0.759617 |
Target: 5'- uGCGCAGcCagGC-GCcgUCGCGCcGGGc -3' miRNA: 3'- -CGCGUUuGa-CGaCGaaAGCGCGaCCC- -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 29201 | 0.66 | 0.770193 |
Target: 5'- cCGCAAcgaUGCcGCcuacaaccgCGCGCUGGGc -3' miRNA: 3'- cGCGUUug-ACGaCGaaa------GCGCGACCC- -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 20071 | 0.7 | 0.546103 |
Target: 5'- cGCGCGcGCUGC-GCgugcUCGCuGCgGGGa -3' miRNA: 3'- -CGCGUuUGACGaCGaa--AGCG-CGaCCC- -5' |
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26701 | 3' | -53 | NC_005808.1 | + | 20468 | 0.67 | 0.671021 |
Target: 5'- cGUGCAAAgcCUGUUcgaccGCgg-CGCGCUGGa -3' miRNA: 3'- -CGCGUUU--GACGA-----CGaaaGCGCGACCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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