miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26701 5' -54.3 NC_005808.1 + 27884 0.73 0.326198
Target:  5'- cUACCGGGCGC-AGGGCaUGGAgg-CGCa -3'
miRNA:   3'- -GUGGCUCGCGcUUUCG-ACCUacaGCG- -5'
26701 5' -54.3 NC_005808.1 + 19937 1 0.00397
Target:  5'- gCACCGAGCGCGAAAGCUGGAUGU-GCa -3'
miRNA:   3'- -GUGGCUCGCGCUUUCGACCUACAgCG- -5'
26701 5' -54.3 NC_005808.1 + 33641 0.68 0.550238
Target:  5'- uUACCGAcGUGCGGAuGCUGGAacaGUUcgGCg -3'
miRNA:   3'- -GUGGCU-CGCGCUUuCGACCUa--CAG--CG- -5'
26701 5' -54.3 NC_005808.1 + 21452 0.69 0.539258
Target:  5'- aACCaGGGCGCGGAcacggcggccaAGCUGGGcagcGUCGa -3'
miRNA:   3'- gUGG-CUCGCGCUU-----------UCGACCUa---CAGCg -5'
26701 5' -54.3 NC_005808.1 + 6445 0.69 0.506799
Target:  5'- cCACCGccCGCGAAGGCgucGccGUCGCg -3'
miRNA:   3'- -GUGGCucGCGCUUUCGac-CuaCAGCG- -5'
26701 5' -54.3 NC_005808.1 + 34810 0.69 0.496163
Target:  5'- uGCUGGGCgGCGAAGGgUGGAcGccggCGCa -3'
miRNA:   3'- gUGGCUCG-CGCUUUCgACCUaCa---GCG- -5'
26701 5' -54.3 NC_005808.1 + 17341 0.66 0.706901
Target:  5'- gACCGAGCaGCGcGAGCaacaGGUG-CGCu -3'
miRNA:   3'- gUGGCUCG-CGCuUUCGac--CUACaGCG- -5'
26701 5' -54.3 NC_005808.1 + 12803 0.66 0.695839
Target:  5'- gCAUCGAGCGCGAGacAGCgu-AUGccgaaaucUCGCg -3'
miRNA:   3'- -GUGGCUCGCGCUU--UCGaccUAC--------AGCG- -5'
26701 5' -54.3 NC_005808.1 + 13628 0.67 0.639795
Target:  5'- aCACCuGGC-UGAAAGUcGGcAUGUCGCu -3'
miRNA:   3'- -GUGGcUCGcGCUUUCGaCC-UACAGCG- -5'
26701 5' -54.3 NC_005808.1 + 6093 0.67 0.62852
Target:  5'- -gUCGAGCGCGGccuuGCgc-AUGUCGCa -3'
miRNA:   3'- guGGCUCGCGCUuu--CGaccUACAGCG- -5'
26701 5' -54.3 NC_005808.1 + 35970 0.69 0.506799
Target:  5'- gGCCaAGCGCGcGAAGCUGGcgG-CGg -3'
miRNA:   3'- gUGGcUCGCGC-UUUCGACCuaCaGCg -5'
26701 5' -54.3 NC_005808.1 + 13223 0.72 0.378731
Target:  5'- gCGCCGAGUcCGAGGGCUGGGgcaaggccaccggCGCg -3'
miRNA:   3'- -GUGGCUCGcGCUUUCGACCUaca----------GCG- -5'
26701 5' -54.3 NC_005808.1 + 27975 0.67 0.651063
Target:  5'- gCACCG-GCGcCGGAAGCaUGGAaGccgaCGCa -3'
miRNA:   3'- -GUGGCuCGC-GCUUUCG-ACCUaCa---GCG- -5'
26701 5' -54.3 NC_005808.1 + 29986 0.71 0.424853
Target:  5'- uGCCGAGCGCGucGGCgccAUG-CGCa -3'
miRNA:   3'- gUGGCUCGCGCuuUCGaccUACaGCG- -5'
26701 5' -54.3 NC_005808.1 + 1893 0.68 0.565723
Target:  5'- gGCCGGGUggGCGAAcagcAGCgGGAUuuuuccugcguuccaGUCGCg -3'
miRNA:   3'- gUGGCUCG--CGCUU----UCGaCCUA---------------CAGCG- -5'
26701 5' -54.3 NC_005808.1 + 7245 0.67 0.651063
Target:  5'- cCACUG-GCGCG--GGCc-GAUGUCGCc -3'
miRNA:   3'- -GUGGCuCGCGCuuUCGacCUACAGCG- -5'
26701 5' -54.3 NC_005808.1 + 41459 0.66 0.722256
Target:  5'- cCGCCGuAGCGCGAGcuaacgguuacaccgGGCc-GAUG-CGCg -3'
miRNA:   3'- -GUGGC-UCGCGCUU---------------UCGacCUACaGCG- -5'
26701 5' -54.3 NC_005808.1 + 24491 0.7 0.444618
Target:  5'- gUACCGgacGGCGCGAAGGCguccUGGu--UCGCg -3'
miRNA:   3'- -GUGGC---UCGCGCUUUCG----ACCuacAGCG- -5'
26701 5' -54.3 NC_005808.1 + 17516 0.77 0.172377
Target:  5'- gCGCCGGGCGCGcugcGCUGGGUGgcgaUGCu -3'
miRNA:   3'- -GUGGCUCGCGCuuu-CGACCUACa---GCG- -5'
26701 5' -54.3 NC_005808.1 + 16772 0.66 0.695839
Target:  5'- cCACCGGcGaCGUGAAGGCgaug-GUCGCc -3'
miRNA:   3'- -GUGGCU-C-GCGCUUUCGaccuaCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.