miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26702 3' -55.6 NC_005808.1 + 495 0.76 0.148891
Target:  5'- uCGGCAGCAuACUGCgccgcggCGGCUUGCAGgCGg -3'
miRNA:   3'- -GUCGUCGU-UGACGa------GCUGAGCGUC-GU- -5'
26702 3' -55.6 NC_005808.1 + 26122 0.67 0.51
Target:  5'- -uGcCGGCAugUGUUCG--UCGCGGCAg -3'
miRNA:   3'- guC-GUCGUugACGAGCugAGCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 31085 0.67 0.51
Target:  5'- -uGguGCcGCUGCUCacCUCGguGCAg -3'
miRNA:   3'- guCguCGuUGACGAGcuGAGCguCGU- -5'
26702 3' -55.6 NC_005808.1 + 5664 0.67 0.520877
Target:  5'- cCAGCGGUAGCUGUUCaGCaaGCuGCu -3'
miRNA:   3'- -GUCGUCGUUGACGAGcUGagCGuCGu -5'
26702 3' -55.6 NC_005808.1 + 31923 0.66 0.542893
Target:  5'- -uGCGGCGuuucgagcGCUGCUCGACaCGCA-CGa -3'
miRNA:   3'- guCGUCGU--------UGACGAGCUGaGCGUcGU- -5'
26702 3' -55.6 NC_005808.1 + 18708 0.66 0.554016
Target:  5'- uCAGCAGCAGC-GCaUCGguACg-GCGGCAc -3'
miRNA:   3'- -GUCGUCGUUGaCG-AGC--UGagCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 23659 0.66 0.576454
Target:  5'- gGGCAGCAACUGCaccaggCGACcCuCGGUc -3'
miRNA:   3'- gUCGUCGUUGACGa-----GCUGaGcGUCGu -5'
26702 3' -55.6 NC_005808.1 + 3564 0.66 0.599088
Target:  5'- -cGCAGCAGCggGCUgGGCguacaccgaucCGCGGCc -3'
miRNA:   3'- guCGUCGUUGa-CGAgCUGa----------GCGUCGu -5'
26702 3' -55.6 NC_005808.1 + 29947 0.66 0.599088
Target:  5'- cCAGuCAGguGgUGCUUGuCgUCGCGGCGc -3'
miRNA:   3'- -GUC-GUCguUgACGAGCuG-AGCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 16224 0.67 0.51
Target:  5'- gAGCAGCAGCaaCUCGGugaGCGGCAc -3'
miRNA:   3'- gUCGUCGUUGacGAGCUgagCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 12521 0.67 0.51
Target:  5'- aCAGCgcgucgAGguGCUGCUCGAC-CuCGGCGu -3'
miRNA:   3'- -GUCG------UCguUGACGAGCUGaGcGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 34217 0.67 0.47797
Target:  5'- gGGCGGCGAUU-CUCGAagauucgagCGCGGCGg -3'
miRNA:   3'- gUCGUCGUUGAcGAGCUga-------GCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 33900 0.75 0.151462
Target:  5'- uCGGCAGCAAuCUGCgCGGCgcacaccugggcgCGCAGCAg -3'
miRNA:   3'- -GUCGUCGUU-GACGaGCUGa------------GCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 25746 0.74 0.186626
Target:  5'- gCGGCAGCAcgcugggcgcGCUGCUgGGCg-GCGGCAa -3'
miRNA:   3'- -GUCGUCGU----------UGACGAgCUGagCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 37451 0.72 0.245417
Target:  5'- gAGCAGCGACgGC-CGcCUgCGCGGCAc -3'
miRNA:   3'- gUCGUCGUUGaCGaGCuGA-GCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 9171 0.7 0.349812
Target:  5'- cCGGCAGCGacaacuuggcGCcgucgacguuggccUGCUCGGCggCGCGGCGc -3'
miRNA:   3'- -GUCGUCGU----------UG--------------ACGAGCUGa-GCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 25897 0.69 0.370161
Target:  5'- cCAGUAGCuuCagGCggguuUCGACUUGCAGCu -3'
miRNA:   3'- -GUCGUCGuuGa-CG-----AGCUGAGCGUCGu -5'
26702 3' -55.6 NC_005808.1 + 41613 0.68 0.430891
Target:  5'- gGGCAGCGggcugacggugaaggGCUgGCUCGACaCGUGGCu -3'
miRNA:   3'- gUCGUCGU---------------UGA-CGAGCUGaGCGUCGu -5'
26702 3' -55.6 NC_005808.1 + 37261 0.68 0.436879
Target:  5'- -cGCAGCGcgaugccauGCUGCgccaCGuGCUCGCGGCc -3'
miRNA:   3'- guCGUCGU---------UGACGa---GC-UGAGCGUCGu -5'
26702 3' -55.6 NC_005808.1 + 28964 0.68 0.446964
Target:  5'- -uGCAGCGACaUGC-CGACUUuCAGCc -3'
miRNA:   3'- guCGUCGUUG-ACGaGCUGAGcGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.