miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26702 3' -55.6 NC_005808.1 + 495 0.76 0.148891
Target:  5'- uCGGCAGCAuACUGCgccgcggCGGCUUGCAGgCGg -3'
miRNA:   3'- -GUCGUCGU-UGACGa------GCUGAGCGUC-GU- -5'
26702 3' -55.6 NC_005808.1 + 1141 0.66 0.576454
Target:  5'- gAGCAGCGGCcGUUUGcGCUCGCcGUc -3'
miRNA:   3'- gUCGUCGUUGaCGAGC-UGAGCGuCGu -5'
26702 3' -55.6 NC_005808.1 + 1658 0.71 0.286855
Target:  5'- cCAGUAGCAggucuugcaccucGC-GCUUgGACUCGCGGCGa -3'
miRNA:   3'- -GUCGUCGU-------------UGaCGAG-CUGAGCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 3564 0.66 0.599088
Target:  5'- -cGCAGCAGCggGCUgGGCguacaccgaucCGCGGCc -3'
miRNA:   3'- guCGUCGUUGa-CGAgCUGa----------GCGUCGu -5'
26702 3' -55.6 NC_005808.1 + 4595 0.67 0.488541
Target:  5'- aGGCgAGgAACUGCUCGGC-CuCGGCGa -3'
miRNA:   3'- gUCG-UCgUUGACGAGCUGaGcGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 5664 0.67 0.520877
Target:  5'- cCAGCGGUAGCUGUUCaGCaaGCuGCu -3'
miRNA:   3'- -GUCGUCGUUGACGAGcUGagCGuCGu -5'
26702 3' -55.6 NC_005808.1 + 5759 0.68 0.461298
Target:  5'- gGGCAGCGAgUGCgccagggccUUGACcaucgugucccgccaUCGCGGCAg -3'
miRNA:   3'- gUCGUCGUUgACG---------AGCUG---------------AGCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 7543 0.73 0.238906
Target:  5'- uCGGCGGCG--UGCUCGAUcUGCGGCGc -3'
miRNA:   3'- -GUCGUCGUugACGAGCUGaGCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 8959 0.71 0.295165
Target:  5'- cCAGCGGUGGCcgUGC-CgGAUUCGCAGCGg -3'
miRNA:   3'- -GUCGUCGUUG--ACGaG-CUGAGCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 9171 0.7 0.349812
Target:  5'- cCGGCAGCGacaacuuggcGCcgucgacguuggccUGCUCGGCggCGCGGCGc -3'
miRNA:   3'- -GUCGUCGU----------UG--------------ACGAGCUGa-GCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 10245 0.67 0.47797
Target:  5'- uCGGCGGCGACcGCagCGACcuggGCGGCGg -3'
miRNA:   3'- -GUCGUCGUUGaCGa-GCUGag--CGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 12521 0.67 0.51
Target:  5'- aCAGCgcgucgAGguGCUGCUCGAC-CuCGGCGu -3'
miRNA:   3'- -GUCG------UCguUGACGAGCUGaGcGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 14786 0.7 0.343779
Target:  5'- gGGCAGCGcgcgcgaggACgUGCUgCGGCUgCGCGGCGc -3'
miRNA:   3'- gUCGUCGU---------UG-ACGA-GCUGA-GCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 14893 0.73 0.214297
Target:  5'- cCGGCGGCGagccGCUGC-CGGCgCGCGGCc -3'
miRNA:   3'- -GUCGUCGU----UGACGaGCUGaGCGUCGu -5'
26702 3' -55.6 NC_005808.1 + 16224 0.67 0.51
Target:  5'- gAGCAGCAGCaaCUCGGugaGCGGCAc -3'
miRNA:   3'- gUCGUCGUUGacGAGCUgagCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 18708 0.66 0.554016
Target:  5'- uCAGCAGCAGC-GCaUCGguACg-GCGGCAc -3'
miRNA:   3'- -GUCGUCGUUGaCG-AGC--UGagCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 19694 1.08 0.000573
Target:  5'- gCAGCAGCAACUGCUCGACUCGCAGCAg -3'
miRNA:   3'- -GUCGUCGUUGACGAGCUGAGCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 19756 0.68 0.436879
Target:  5'- -cGCAGCGcgcGCUGUcggcugUCGGCagCGCGGCGa -3'
miRNA:   3'- guCGUCGU---UGACG------AGCUGa-GCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 20065 0.67 0.488541
Target:  5'- cCGGCAcGCGcgcGCUGCgCGuGCUCGCuGCGg -3'
miRNA:   3'- -GUCGU-CGU---UGACGaGC-UGAGCGuCGU- -5'
26702 3' -55.6 NC_005808.1 + 20293 0.68 0.467514
Target:  5'- cCAGCAGCAucguGCUGCcCGACUucgaCGCcGUg -3'
miRNA:   3'- -GUCGUCGU----UGACGaGCUGA----GCGuCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.