Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26702 | 3' | -55.6 | NC_005808.1 | + | 41613 | 0.68 | 0.430891 |
Target: 5'- gGGCAGCGggcugacggugaaggGCUgGCUCGACaCGUGGCu -3' miRNA: 3'- gUCGUCGU---------------UGA-CGAGCUGaGCGUCGu -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 39619 | 0.67 | 0.492799 |
Target: 5'- uCGGCGGCAACUGgaacaacacgucgaaCUCGGguuCUCGCGcuGCGa -3' miRNA: 3'- -GUCGUCGUUGAC---------------GAGCU---GAGCGU--CGU- -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 39063 | 0.67 | 0.51434 |
Target: 5'- uCGGCGGCAGCUGgcacuacacgucgaaCUCGGguuCUCGCGcuGCGu -3' miRNA: 3'- -GUCGUCGUUGAC---------------GAGCU---GAGCGU--CGU- -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 38559 | 0.66 | 0.599088 |
Target: 5'- -cGCccGGCuGC-GCUCGACccgCGCGGCAu -3' miRNA: 3'- guCG--UCGuUGaCGAGCUGa--GCGUCGU- -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 37451 | 0.72 | 0.245417 |
Target: 5'- gAGCAGCGACgGC-CGcCUgCGCGGCAc -3' miRNA: 3'- gUCGUCGUUGaCGaGCuGA-GCGUCGU- -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 37261 | 0.68 | 0.436879 |
Target: 5'- -cGCAGCGcgaugccauGCUGCgccaCGuGCUCGCGGCc -3' miRNA: 3'- guCGUCGU---------UGACGa---GC-UGAGCGUCGu -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 34217 | 0.67 | 0.47797 |
Target: 5'- gGGCGGCGAUU-CUCGAagauucgagCGCGGCGg -3' miRNA: 3'- gUCGUCGUUGAcGAGCUga-------GCGUCGU- -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 33900 | 0.75 | 0.151462 |
Target: 5'- uCGGCAGCAAuCUGCgCGGCgcacaccugggcgCGCAGCAg -3' miRNA: 3'- -GUCGUCGUU-GACGaGCUGa------------GCGUCGU- -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 32778 | 0.68 | 0.426926 |
Target: 5'- -uGCAGCGugaugcgcaaacGCUGCUUGACUgGUucGGCGu -3' miRNA: 3'- guCGUCGU------------UGACGAGCUGAgCG--UCGU- -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 31923 | 0.66 | 0.542893 |
Target: 5'- -uGCGGCGuuucgagcGCUGCUCGACaCGCA-CGa -3' miRNA: 3'- guCGUCGU--------UGACGAGCUGaGCGUcGU- -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 31463 | 0.68 | 0.4644 |
Target: 5'- cCAGCAGCAggccgaACUGCUCGcACgUuugaaccaauuggcCGCAGCc -3' miRNA: 3'- -GUCGUCGU------UGACGAGC-UG-A--------------GCGUCGu -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 31085 | 0.67 | 0.51 |
Target: 5'- -uGguGCcGCUGCUCacCUCGguGCAg -3' miRNA: 3'- guCguCGuUGACGAGcuGAGCguCGU- -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 29947 | 0.66 | 0.599088 |
Target: 5'- cCAGuCAGguGgUGCUUGuCgUCGCGGCGc -3' miRNA: 3'- -GUC-GUCguUgACGAGCuG-AGCGUCGU- -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 29246 | 0.7 | 0.35242 |
Target: 5'- cCAGaAGCAAUUGCgCGACUUcgGCGGCGa -3' miRNA: 3'- -GUCgUCGUUGACGaGCUGAG--CGUCGU- -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 28964 | 0.68 | 0.446964 |
Target: 5'- -uGCAGCGACaUGC-CGACUUuCAGCc -3' miRNA: 3'- guCGUCGUUG-ACGaGCUGAGcGUCGu -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 27497 | 0.68 | 0.467514 |
Target: 5'- aGGCAGCuauuACgGCgcgCGG-UCGCAGCAa -3' miRNA: 3'- gUCGUCGu---UGaCGa--GCUgAGCGUCGU- -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 27335 | 0.67 | 0.47797 |
Target: 5'- aCAGCGGgCAACUGUUUG---UGCGGCAg -3' miRNA: 3'- -GUCGUC-GUUGACGAGCugaGCGUCGU- -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 26122 | 0.67 | 0.51 |
Target: 5'- -uGcCGGCAugUGUUCG--UCGCGGCAg -3' miRNA: 3'- guC-GUCGUugACGAGCugAGCGUCGU- -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 25897 | 0.69 | 0.370161 |
Target: 5'- cCAGUAGCuuCagGCggguuUCGACUUGCAGCu -3' miRNA: 3'- -GUCGUCGuuGa-CG-----AGCUGAGCGUCGu -5' |
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26702 | 3' | -55.6 | NC_005808.1 | + | 25746 | 0.74 | 0.186626 |
Target: 5'- gCGGCAGCAcgcugggcgcGCUGCUgGGCg-GCGGCAa -3' miRNA: 3'- -GUCGUCGU----------UGACGAgCUGagCGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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