miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26702 3' -55.6 NC_005808.1 + 20293 0.68 0.467514
Target:  5'- cCAGCAGCAucguGCUGCcCGACUucgaCGCcGUg -3'
miRNA:   3'- -GUCGUCGU----UGACGaGCUGA----GCGuCGu -5'
26702 3' -55.6 NC_005808.1 + 31463 0.68 0.4644
Target:  5'- cCAGCAGCAggccgaACUGCUCGcACgUuugaaccaauuggcCGCAGCc -3'
miRNA:   3'- -GUCGUCGU------UGACGAGC-UG-A--------------GCGUCGu -5'
26702 3' -55.6 NC_005808.1 + 5759 0.68 0.461298
Target:  5'- gGGCAGCGAgUGCgccagggccUUGACcaucgugucccgccaUCGCGGCAg -3'
miRNA:   3'- gUCGUCGUUgACG---------AGCUG---------------AGCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 28964 0.68 0.446964
Target:  5'- -uGCAGCGACaUGC-CGACUUuCAGCc -3'
miRNA:   3'- guCGUCGUUG-ACGaGCUGAGcGUCGu -5'
26702 3' -55.6 NC_005808.1 + 37261 0.68 0.436879
Target:  5'- -cGCAGCGcgaugccauGCUGCgccaCGuGCUCGCGGCc -3'
miRNA:   3'- guCGUCGU---------UGACGa---GC-UGAGCGUCGu -5'
26702 3' -55.6 NC_005808.1 + 19756 0.68 0.436879
Target:  5'- -cGCAGCGcgcGCUGUcggcugUCGGCagCGCGGCGa -3'
miRNA:   3'- guCGUCGU---UGACG------AGCUGa-GCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 41613 0.68 0.430891
Target:  5'- gGGCAGCGggcugacggugaaggGCUgGCUCGACaCGUGGCu -3'
miRNA:   3'- gUCGUCGU---------------UGA-CGAGCUGaGCGUCGu -5'
26702 3' -55.6 NC_005808.1 + 32778 0.68 0.426926
Target:  5'- -uGCAGCGugaugcgcaaacGCUGCUUGACUgGUucGGCGu -3'
miRNA:   3'- guCGUCGU------------UGACGAGCUGAgCG--UCGU- -5'
26702 3' -55.6 NC_005808.1 + 22345 0.69 0.379258
Target:  5'- aCAGCAGCAACaGC-CGACccaGgAGCAa -3'
miRNA:   3'- -GUCGUCGUUGaCGaGCUGag-CgUCGU- -5'
26702 3' -55.6 NC_005808.1 + 25897 0.69 0.370161
Target:  5'- cCAGUAGCuuCagGCggguuUCGACUUGCAGCu -3'
miRNA:   3'- -GUCGUCGuuGa-CG-----AGCUGAGCGUCGu -5'
26702 3' -55.6 NC_005808.1 + 29246 0.7 0.35242
Target:  5'- cCAGaAGCAAUUGCgCGACUUcgGCGGCGa -3'
miRNA:   3'- -GUCgUCGUUGACGaGCUGAG--CGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 9171 0.7 0.349812
Target:  5'- cCGGCAGCGacaacuuggcGCcgucgacguuggccUGCUCGGCggCGCGGCGc -3'
miRNA:   3'- -GUCGUCGU----------UG--------------ACGAGCUGa-GCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 14786 0.7 0.343779
Target:  5'- gGGCAGCGcgcgcgaggACgUGCUgCGGCUgCGCGGCGc -3'
miRNA:   3'- gUCGUCGU---------UG-ACGA-GCUGA-GCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 25654 0.7 0.33529
Target:  5'- aCGGCGGCAcGCUGCUgGACggCGCcGUg -3'
miRNA:   3'- -GUCGUCGU-UGACGAgCUGa-GCGuCGu -5'
26702 3' -55.6 NC_005808.1 + 20458 0.7 0.33445
Target:  5'- gCAGCAccaccguGCAAagcCUGUUCGAC-CGCGGCGc -3'
miRNA:   3'- -GUCGU-------CGUU---GACGAGCUGaGCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 8959 0.71 0.295165
Target:  5'- cCAGCGGUGGCcgUGC-CgGAUUCGCAGCGg -3'
miRNA:   3'- -GUCGUCGUUG--ACGaG-CUGAGCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 1658 0.71 0.286855
Target:  5'- cCAGUAGCAggucuugcaccucGC-GCUUgGACUCGCGGCGa -3'
miRNA:   3'- -GUCGUCGU-------------UGaCGAG-CUGAGCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 37451 0.72 0.245417
Target:  5'- gAGCAGCGACgGC-CGcCUgCGCGGCAc -3'
miRNA:   3'- gUCGUCGUUGaCGaGCuGA-GCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 7543 0.73 0.238906
Target:  5'- uCGGCGGCG--UGCUCGAUcUGCGGCGc -3'
miRNA:   3'- -GUCGUCGUugACGAGCUGaGCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 14893 0.73 0.214297
Target:  5'- cCGGCGGCGagccGCUGC-CGGCgCGCGGCc -3'
miRNA:   3'- -GUCGUCGU----UGACGaGCUGaGCGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.