Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26702 | 5' | -57.1 | NC_005808.1 | + | 19728 | 1.05 | 0.000775 |
Target: 5'- aACCGCGCGAACCAGAAGCAGCCCAAUu -3' miRNA: 3'- -UGGCGCGCUUGGUCUUCGUCGGGUUA- -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 4044 | 0.78 | 0.078836 |
Target: 5'- gGCCGCgGCGAGCggCAGGccAGCGGCCCAGg -3' miRNA: 3'- -UGGCG-CGCUUG--GUCU--UCGUCGGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 10988 | 0.77 | 0.088398 |
Target: 5'- cGCUGCGUaaagcagcagguaGGGCCAGAAGCAGgCCCAGg -3' miRNA: 3'- -UGGCGCG-------------CUUGGUCUUCGUC-GGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 17869 | 0.76 | 0.102573 |
Target: 5'- gGCCGCGCaGGCgCgguGGAAGCGGCCCGAc -3' miRNA: 3'- -UGGCGCGcUUG-G---UCUUCGUCGGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 4036 | 0.72 | 0.202251 |
Target: 5'- uGCCGCGCGggUC-GAGcGCAGCCgGGc -3' miRNA: 3'- -UGGCGCGCuuGGuCUU-CGUCGGgUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 18093 | 0.72 | 0.202251 |
Target: 5'- aGCCgGCGCGAACCAGGAcgccuucgcGCcGUCCGGUa -3' miRNA: 3'- -UGG-CGCGCUUGGUCUU---------CGuCGGGUUA- -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 27701 | 0.72 | 0.213574 |
Target: 5'- gGCCGCGC--GCCGGcAGCGGCUCGc- -3' miRNA: 3'- -UGGCGCGcuUGGUCuUCGUCGGGUua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 21439 | 0.72 | 0.219437 |
Target: 5'- gGCCGCGCuguuGAACCAGGgcgcggacacGGCGGCCa--- -3' miRNA: 3'- -UGGCGCG----CUUGGUCU----------UCGUCGGguua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 28647 | 0.71 | 0.225438 |
Target: 5'- uCCGCGCGcaguGCCAGAucggugccGGCGGCCUc-- -3' miRNA: 3'- uGGCGCGCu---UGGUCU--------UCGUCGGGuua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 24462 | 0.71 | 0.231577 |
Target: 5'- aGCUGCGCGAGCCGGgcGacaAGUUCGAc -3' miRNA: 3'- -UGGCGCGCUUGGUCuuCg--UCGGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 8997 | 0.71 | 0.237221 |
Target: 5'- cGCCGCGCGGGggcgcuuCCAGcAGGCGGCgcaCCAGUu -3' miRNA: 3'- -UGGCGCGCUU-------GGUC-UUCGUCG---GGUUA- -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 16200 | 0.7 | 0.264405 |
Target: 5'- cGCCGUGCuGGCCgAGAaguucgAGCAGUCCAAg -3' miRNA: 3'- -UGGCGCGcUUGG-UCU------UCGUCGGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 39773 | 0.7 | 0.271408 |
Target: 5'- cGCUGCGCGuGGCCGcGAGCaccuGGCCCGAc -3' miRNA: 3'- -UGGCGCGC-UUGGUcUUCG----UCGGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 37058 | 0.7 | 0.300909 |
Target: 5'- -gCGCGUGAuugACCAGAAGCuGCCg--- -3' miRNA: 3'- ugGCGCGCU---UGGUCUUCGuCGGguua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 31041 | 0.69 | 0.308661 |
Target: 5'- aAUCGCGCGGGCCAacguGCgcgaaGGCCCGAa -3' miRNA: 3'- -UGGCGCGCUUGGUcuu-CG-----UCGGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 29027 | 0.69 | 0.316564 |
Target: 5'- cGCCGCGCuucGGCCAGGucgauacccaccGGCGGCUCGu- -3' miRNA: 3'- -UGGCGCGc--UUGGUCU------------UCGUCGGGUua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 13134 | 0.69 | 0.319768 |
Target: 5'- gGCCGCGCGcuucgucgccugguGCCAGGAGCA-CCUGGg -3' miRNA: 3'- -UGGCGCGCu-------------UGGUCUUCGUcGGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 23922 | 0.69 | 0.332825 |
Target: 5'- cCCGCGUGGuguaacagGCCGGggGCGGgcgccgccCCCGAUc -3' miRNA: 3'- uGGCGCGCU--------UGGUCuuCGUC--------GGGUUA- -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 37372 | 0.68 | 0.358349 |
Target: 5'- aACUGCGCGAAcugcuggguauCCGGuuGCAGgCCAGc -3' miRNA: 3'- -UGGCGCGCUU-----------GGUCuuCGUCgGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 33951 | 0.68 | 0.359223 |
Target: 5'- gACCGCGCGAugaagGCCGGcgaccucgccaccgcAGCGGCCgAGa -3' miRNA: 3'- -UGGCGCGCU-----UGGUCu--------------UCGUCGGgUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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