miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26702 5' -57.1 NC_005808.1 + 4036 0.72 0.202251
Target:  5'- uGCCGCGCGggUC-GAGcGCAGCCgGGc -3'
miRNA:   3'- -UGGCGCGCuuGGuCUU-CGUCGGgUUa -5'
26702 5' -57.1 NC_005808.1 + 25621 0.68 0.376112
Target:  5'- gGCgGCGCGGucGCCAGcAGCGcGUCCAc- -3'
miRNA:   3'- -UGgCGCGCU--UGGUCuUCGU-CGGGUua -5'
26702 5' -57.1 NC_005808.1 + 17785 0.68 0.385213
Target:  5'- -gCGCGCGAACggaUAGAAGCGcGCgCAGUa -3'
miRNA:   3'- ugGCGCGCUUG---GUCUUCGU-CGgGUUA- -5'
26702 5' -57.1 NC_005808.1 + 24087 0.68 0.385213
Target:  5'- gACCGCGCGGGgCAcGGGCAcCCCGc- -3'
miRNA:   3'- -UGGCGCGCUUgGUcUUCGUcGGGUua -5'
26702 5' -57.1 NC_005808.1 + 30637 0.68 0.385213
Target:  5'- aGCCgGCGCGAAUgAGGGcGCAGaCCAAUu -3'
miRNA:   3'- -UGG-CGCGCUUGgUCUU-CGUCgGGUUA- -5'
26702 5' -57.1 NC_005808.1 + 602 0.67 0.42304
Target:  5'- gGCCGCcuGCGggUCGGccAGCAGCgCCGu- -3'
miRNA:   3'- -UGGCG--CGCuuGGUCu-UCGUCG-GGUua -5'
26702 5' -57.1 NC_005808.1 + 679 0.66 0.47331
Target:  5'- gGCCGCcuacgGCGGcGCCGGccGGGCcGCCCAAg -3'
miRNA:   3'- -UGGCG-----CGCU-UGGUC--UUCGuCGGGUUa -5'
26702 5' -57.1 NC_005808.1 + 6400 0.66 0.504873
Target:  5'- gGCCgGCcCGGugUAGucGCGGCCCAu- -3'
miRNA:   3'- -UGG-CGcGCUugGUCuuCGUCGGGUua -5'
26702 5' -57.1 NC_005808.1 + 24647 0.66 0.515597
Target:  5'- uGCCG-GCGGGCCAGGAugguguugucGC-GCCCGc- -3'
miRNA:   3'- -UGGCgCGCUUGGUCUU----------CGuCGGGUua -5'
26702 5' -57.1 NC_005808.1 + 40650 0.68 0.367157
Target:  5'- gGCCGCGCGcucGACCAGAAcccGCAGa-CGAUc -3'
miRNA:   3'- -UGGCGCGC---UUGGUCUU---CGUCggGUUA- -5'
26702 5' -57.1 NC_005808.1 + 37372 0.68 0.358349
Target:  5'- aACUGCGCGAAcugcuggguauCCGGuuGCAGgCCAGc -3'
miRNA:   3'- -UGGCGCGCUU-----------GGUCuuCGUCgGGUUa -5'
26702 5' -57.1 NC_005808.1 + 18093 0.72 0.202251
Target:  5'- aGCCgGCGCGAACCAGGAcgccuucgcGCcGUCCGGUa -3'
miRNA:   3'- -UGG-CGCGCUUGGUCUU---------CGuCGGGUUA- -5'
26702 5' -57.1 NC_005808.1 + 27701 0.72 0.213574
Target:  5'- gGCCGCGC--GCCGGcAGCGGCUCGc- -3'
miRNA:   3'- -UGGCGCGcuUGGUCuUCGUCGGGUua -5'
26702 5' -57.1 NC_005808.1 + 28647 0.71 0.225438
Target:  5'- uCCGCGCGcaguGCCAGAucggugccGGCGGCCUc-- -3'
miRNA:   3'- uGGCGCGCu---UGGUCU--------UCGUCGGGuua -5'
26702 5' -57.1 NC_005808.1 + 8997 0.71 0.237221
Target:  5'- cGCCGCGCGGGggcgcuuCCAGcAGGCGGCgcaCCAGUu -3'
miRNA:   3'- -UGGCGCGCUU-------GGUC-UUCGUCG---GGUUA- -5'
26702 5' -57.1 NC_005808.1 + 39773 0.7 0.271408
Target:  5'- cGCUGCGCGuGGCCGcGAGCaccuGGCCCGAc -3'
miRNA:   3'- -UGGCGCGC-UUGGUcUUCG----UCGGGUUa -5'
26702 5' -57.1 NC_005808.1 + 37058 0.7 0.300909
Target:  5'- -gCGCGUGAuugACCAGAAGCuGCCg--- -3'
miRNA:   3'- ugGCGCGCU---UGGUCUUCGuCGGguua -5'
26702 5' -57.1 NC_005808.1 + 31041 0.69 0.308661
Target:  5'- aAUCGCGCGGGCCAacguGCgcgaaGGCCCGAa -3'
miRNA:   3'- -UGGCGCGCUUGGUcuu-CG-----UCGGGUUa -5'
26702 5' -57.1 NC_005808.1 + 29027 0.69 0.316564
Target:  5'- cGCCGCGCuucGGCCAGGucgauacccaccGGCGGCUCGu- -3'
miRNA:   3'- -UGGCGCGc--UUGGUCU------------UCGUCGGGUua -5'
26702 5' -57.1 NC_005808.1 + 19156 0.66 0.515597
Target:  5'- -aCGCGCGAACCAuccGCAuCCCGGc -3'
miRNA:   3'- ugGCGCGCUUGGUcuuCGUcGGGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.