Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26702 | 5' | -57.1 | NC_005808.1 | + | 10988 | 0.77 | 0.088398 |
Target: 5'- cGCUGCGUaaagcagcagguaGGGCCAGAAGCAGgCCCAGg -3' miRNA: 3'- -UGGCGCG-------------CUUGGUCUUCGUC-GGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 13014 | 0.67 | 0.452829 |
Target: 5'- aACCGCGCGc-CUGGgcGCGGCCg--- -3' miRNA: 3'- -UGGCGCGCuuGGUCuuCGUCGGguua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 22727 | 0.66 | 0.46301 |
Target: 5'- -gCGCGCGAcGCCuucGGCAcGCCCGAa -3' miRNA: 3'- ugGCGCGCU-UGGucuUCGU-CGGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 19156 | 0.66 | 0.515597 |
Target: 5'- -aCGCGCGAACCAuccGCAuCCCGGc -3' miRNA: 3'- ugGCGCGCUUGGUcuuCGUcGGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 16200 | 0.7 | 0.264405 |
Target: 5'- cGCCGUGCuGGCCgAGAaguucgAGCAGUCCAAg -3' miRNA: 3'- -UGGCGCGcUUGG-UCU------UCGUCGGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 13134 | 0.69 | 0.319768 |
Target: 5'- gGCCGCGCGcuucgucgccugguGCCAGGAGCA-CCUGGg -3' miRNA: 3'- -UGGCGCGCu-------------UGGUCUUCGUcGGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 33951 | 0.68 | 0.359223 |
Target: 5'- gACCGCGCGAugaagGCCGGcgaccucgccaccgcAGCGGCCgAGa -3' miRNA: 3'- -UGGCGCGCU-----UGGUCu--------------UCGUCGGgUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 13836 | 0.68 | 0.385213 |
Target: 5'- cGCCGUGCGcGCCgAGAAGC-GCaCCGc- -3' miRNA: 3'- -UGGCGCGCuUGG-UCUUCGuCG-GGUua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 19728 | 1.05 | 0.000775 |
Target: 5'- aACCGCGCGAACCAGAAGCAGCCCAAUu -3' miRNA: 3'- -UGGCGCGCUUGGUCUUCGUCGGGUUA- -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 18870 | 0.67 | 0.442771 |
Target: 5'- uGCUGCGCGccACC-GAGGCacuGGCCCGc- -3' miRNA: 3'- -UGGCGCGCu-UGGuCUUCG---UCGGGUua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 11571 | 0.68 | 0.394459 |
Target: 5'- cCCGCGCGAuuGCCucGGccGGCaAGCCCGu- -3' miRNA: 3'- uGGCGCGCU--UGGu-CU--UCG-UCGGGUua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 16319 | 0.68 | 0.393527 |
Target: 5'- cAUCGCGCGcgaugcgcgagccGACCAGGccggcGGguGCCCGu- -3' miRNA: 3'- -UGGCGCGC-------------UUGGUCU-----UCguCGGGUua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 17869 | 0.76 | 0.102573 |
Target: 5'- gGCCGCGCaGGCgCgguGGAAGCGGCCCGAc -3' miRNA: 3'- -UGGCGCGcUUG-G---UCUUCGUCGGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 19636 | 0.67 | 0.42304 |
Target: 5'- gGCUGaCGCaGGaauACCAGAAGCAGaCCGAa -3' miRNA: 3'- -UGGC-GCG-CU---UGGUCUUCGUCgGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 21439 | 0.72 | 0.219437 |
Target: 5'- gGCCGCGCuguuGAACCAGGgcgcggacacGGCGGCCa--- -3' miRNA: 3'- -UGGCGCG----CUUGGUCU----------UCGUCGGguua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 21409 | 0.68 | 0.385213 |
Target: 5'- -aCGCGCaGACCAGcAGCAGgCCGc- -3' miRNA: 3'- ugGCGCGcUUGGUCuUCGUCgGGUua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 33832 | 0.67 | 0.43284 |
Target: 5'- cGCCGCGUGcuGCCcGAAGCGGCaCGu- -3' miRNA: 3'- -UGGCGCGCu-UGGuCUUCGUCGgGUua -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 40578 | 0.67 | 0.452829 |
Target: 5'- cGCCuGCGCGAcuucGCCAGcGAGC-GCCUGGg -3' miRNA: 3'- -UGG-CGCGCU----UGGUC-UUCGuCGGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 24462 | 0.71 | 0.231577 |
Target: 5'- aGCUGCGCGAGCCGGgcGacaAGUUCGAc -3' miRNA: 3'- -UGGCGCGCUUGGUCuuCg--UCGGGUUa -5' |
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26702 | 5' | -57.1 | NC_005808.1 | + | 23922 | 0.69 | 0.332825 |
Target: 5'- cCCGCGUGGuguaacagGCCGGggGCGGgcgccgccCCCGAUc -3' miRNA: 3'- uGGCGCGCU--------UGGUCuuCGUC--------GGGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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