Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26710 | 5' | -55 | NC_005808.1 | + | 41579 | 0.65 | 0.681098 |
Target: 5'- cCGUGGCCU----UCCAGGuguucgacGCUGCGGUg -3' miRNA: 3'- -GCGCCGGAcauaAGGUUC--------UGGUGCCA- -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 2665 | 0.65 | 0.681098 |
Target: 5'- aGCGGUCgcccagGUGUUCgAucaGCCACGGc -3' miRNA: 3'- gCGCCGGa-----CAUAAGgUuc-UGGUGCCa -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 19371 | 0.66 | 0.669936 |
Target: 5'- gCGCGGUCgGUGg-CCGAGGCCGaGGc -3' miRNA: 3'- -GCGCCGGaCAUaaGGUUCUGGUgCCa -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 856 | 0.66 | 0.669936 |
Target: 5'- cCGUGGCCUGUAUggcuuucguuUCCcuaucgacgAGGGCCGCc-- -3' miRNA: 3'- -GCGCCGGACAUA----------AGG---------UUCUGGUGcca -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 7062 | 0.66 | 0.669936 |
Target: 5'- gGCGGCCagGUAcUUCAugacGCCGCGGc -3' miRNA: 3'- gCGCCGGa-CAUaAGGUuc--UGGUGCCa -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 11277 | 0.67 | 0.602573 |
Target: 5'- cCGCGaCCUGggAUUCCAgccGGGCCaccacGCGGUc -3' miRNA: 3'- -GCGCcGGACa-UAAGGU---UCUGG-----UGCCA- -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 32932 | 0.67 | 0.602573 |
Target: 5'- gGCGG-CUGUucggCCAGggcGACCACGGc -3' miRNA: 3'- gCGCCgGACAuaa-GGUU---CUGGUGCCa -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 8260 | 0.67 | 0.569109 |
Target: 5'- aGCGGCCcagGUGUUCgaucugacgCAcgcuaucgaccAGGCCGCGGa -3' miRNA: 3'- gCGCCGGa--CAUAAG---------GU-----------UCUGGUGCCa -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 9375 | 0.68 | 0.556947 |
Target: 5'- uGCGGCCgcgugcauUGUGcagCCAcugcaugucgcgcAGGCCGCGGg -3' miRNA: 3'- gCGCCGG--------ACAUaa-GGU-------------UCUGGUGCCa -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 15285 | 0.68 | 0.551443 |
Target: 5'- aCGCGcGCCUGUGggcgUcgugggaagccuucgCCAAGGCgCGCGGc -3' miRNA: 3'- -GCGC-CGGACAUa---A---------------GGUUCUG-GUGCCa -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 25589 | 0.68 | 0.536124 |
Target: 5'- cCGCGGUCUGcGgcCCAGGcaguggcaACCACGGc -3' miRNA: 3'- -GCGCCGGACaUaaGGUUC--------UGGUGCCa -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 28090 | 0.68 | 0.503831 |
Target: 5'- cCGCGGCgUcGUAUUCCG---UCGCGGUg -3' miRNA: 3'- -GCGCCGgA-CAUAAGGUucuGGUGCCA- -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 34619 | 0.69 | 0.482777 |
Target: 5'- gCGCGGCgacaUGgaaaccacgAUgcgcgCCGAGGCCACGGg -3' miRNA: 3'- -GCGCCGg---ACa--------UAa----GGUUCUGGUGCCa -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 37545 | 0.7 | 0.422368 |
Target: 5'- cCGCGGCCUGUGcUCaagCAGGACgccaucgaGCGGg -3' miRNA: 3'- -GCGCCGGACAUaAG---GUUCUGg-------UGCCa -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 4895 | 0.7 | 0.422368 |
Target: 5'- gGCGGCCUcg--UUUucGGCCACGGUg -3' miRNA: 3'- gCGCCGGAcauaAGGuuCUGGUGCCA- -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 22634 | 0.7 | 0.412746 |
Target: 5'- gGCGGCCUGc---CCGAaACCugGGUu -3' miRNA: 3'- gCGCCGGACauaaGGUUcUGGugCCA- -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 37856 | 0.7 | 0.403261 |
Target: 5'- uCGCGGCCgUGg---CCGAGAacaUCGCGGUc -3' miRNA: 3'- -GCGCCGG-ACauaaGGUUCU---GGUGCCA- -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 26066 | 0.7 | 0.393915 |
Target: 5'- gGCGGCCUGUAcggCUAuaucggccAGACCAcCGGc -3' miRNA: 3'- gCGCCGGACAUaa-GGU--------UCUGGU-GCCa -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 20365 | 0.71 | 0.38471 |
Target: 5'- uCGCGGCCgacaa-CCAGGGCCGCGu- -3' miRNA: 3'- -GCGCCGGacauaaGGUUCUGGUGCca -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 33962 | 0.71 | 0.366733 |
Target: 5'- gCGCGGCCUGgggcguUUCCGAagggcguaccGGCCACGc- -3' miRNA: 3'- -GCGCCGGACau----AAGGUU----------CUGGUGCca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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