Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26715 | 3' | -59.8 | NC_005808.1 | + | 11301 | 1.07 | 0.000365 |
Target: 5'- cCACCACGCGGUCGCCAGGCUUCGCUGc -3' miRNA: 3'- -GUGGUGCGCCAGCGGUCCGAAGCGAC- -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 15176 | 0.76 | 0.087343 |
Target: 5'- cCGCCggGCGCGGUgCGCCAGGCg-CGCg- -3' miRNA: 3'- -GUGG--UGCGCCA-GCGGUCCGaaGCGac -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 15869 | 0.73 | 0.125808 |
Target: 5'- gCGCgCugGCGGUgGCCcGGCUUUGCa- -3' miRNA: 3'- -GUG-GugCGCCAgCGGuCCGAAGCGac -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 25313 | 0.73 | 0.14442 |
Target: 5'- gCGCC-CGCGG-CGCC-GGCUUCGUg- -3' miRNA: 3'- -GUGGuGCGCCaGCGGuCCGAAGCGac -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 140 | 0.72 | 0.152547 |
Target: 5'- cUACgGCGUGG-CGCCAGGCUUCcccGCa- -3' miRNA: 3'- -GUGgUGCGCCaGCGGUCCGAAG---CGac -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 25621 | 0.72 | 0.152547 |
Target: 5'- gGCgGCGCGGUCGCCAG-CagCGCg- -3' miRNA: 3'- gUGgUGCGCCAGCGGUCcGaaGCGac -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 31309 | 0.72 | 0.156764 |
Target: 5'- gACCGCGUGGUgGCCcGGCUggaaucccaggUCGCg- -3' miRNA: 3'- gUGGUGCGCCAgCGGuCCGA-----------AGCGac -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 8996 | 0.72 | 0.161087 |
Target: 5'- uCGCCGCGCGGgggCGCuuccagCAGGCggCGCa- -3' miRNA: 3'- -GUGGUGCGCCa--GCG------GUCCGaaGCGac -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 38897 | 0.71 | 0.189338 |
Target: 5'- gCGCCGCauggggcaGCGcGUCGCCGGGUggaUUCGCa- -3' miRNA: 3'- -GUGGUG--------CGC-CAGCGGUCCG---AAGCGac -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 24544 | 0.71 | 0.199683 |
Target: 5'- gACCGCGUGGUCGCgCAGcGCggCGaUGg -3' miRNA: 3'- gUGGUGCGCCAGCG-GUC-CGaaGCgAC- -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 4119 | 0.7 | 0.216122 |
Target: 5'- -uUCGuCGCGGUCGUC-GGCUUCGgUGa -3' miRNA: 3'- guGGU-GCGCCAGCGGuCCGAAGCgAC- -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 22125 | 0.69 | 0.239829 |
Target: 5'- aGCgCGcCGCGGUCGaaCAGGCUUUGCa- -3' miRNA: 3'- gUG-GU-GCGCCAGCg-GUCCGAAGCGac -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 26010 | 0.69 | 0.246086 |
Target: 5'- cCAUCGCGUGGUCgGCCucguccGGCgcgUCGCg- -3' miRNA: 3'- -GUGGUGCGCCAG-CGGu-----CCGa--AGCGac -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 16425 | 0.69 | 0.252477 |
Target: 5'- gGCCGCGgGGuaaUCGCC-GGCggCGUUGa -3' miRNA: 3'- gUGGUGCgCC---AGCGGuCCGaaGCGAC- -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 3864 | 0.69 | 0.259005 |
Target: 5'- gUACCAgGCGccGUCGCUguAGGCcgCGCUGc -3' miRNA: 3'- -GUGGUgCGC--CAGCGG--UCCGaaGCGAC- -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 39423 | 0.68 | 0.286496 |
Target: 5'- aCGCa--GCGGaCGCCGGGCUUgccaUGCUGc -3' miRNA: 3'- -GUGgugCGCCaGCGGUCCGAA----GCGAC- -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 28232 | 0.68 | 0.29299 |
Target: 5'- gACCACGCGcGggucggacugCGCCAGGCUcaccaugUUGCg- -3' miRNA: 3'- gUGGUGCGC-Ca---------GCGGUCCGA-------AGCGac -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 18525 | 0.68 | 0.301083 |
Target: 5'- -cCCGCGCGGUCGCCGcuaCUgugCGCg- -3' miRNA: 3'- guGGUGCGCCAGCGGUcc-GAa--GCGac -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 39716 | 0.68 | 0.304068 |
Target: 5'- uCACCGCGCuGGacauccucgaacuggUCGaaCCAGGCcccUCGCUGg -3' miRNA: 3'- -GUGGUGCG-CC---------------AGC--GGUCCGa--AGCGAC- -5' |
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26715 | 3' | -59.8 | NC_005808.1 | + | 24087 | 0.67 | 0.324025 |
Target: 5'- gACCGCGCGGg-GCaCGGGCacccCGCUa -3' miRNA: 3'- gUGGUGCGCCagCG-GUCCGaa--GCGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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