miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26715 3' -59.8 NC_005808.1 + 140 0.72 0.152547
Target:  5'- cUACgGCGUGG-CGCCAGGCUUCcccGCa- -3'
miRNA:   3'- -GUGgUGCGCCaGCGGUCCGAAG---CGac -5'
26715 3' -59.8 NC_005808.1 + 24087 0.67 0.324025
Target:  5'- gACCGCGCGGg-GCaCGGGCacccCGCUa -3'
miRNA:   3'- gUGGUGCGCCagCG-GUCCGaa--GCGAc -5'
26715 3' -59.8 NC_005808.1 + 13390 0.67 0.348244
Target:  5'- cCAgCGCGCGGUUG-UAGGCggcaUCGUUGc -3'
miRNA:   3'- -GUgGUGCGCCAGCgGUCCGa---AGCGAC- -5'
26715 3' -59.8 NC_005808.1 + 27833 0.67 0.365095
Target:  5'- uGCC-CGCGGUggCGCCGGccGCgcCGCUGc -3'
miRNA:   3'- gUGGuGCGCCA--GCGGUC--CGaaGCGAC- -5'
26715 3' -59.8 NC_005808.1 + 39048 0.67 0.365095
Target:  5'- uGCgGCGCGGUUGgCGGGaCUgCGCg- -3'
miRNA:   3'- gUGgUGCGCCAGCgGUCC-GAaGCGac -5'
26715 3' -59.8 NC_005808.1 + 35186 0.66 0.3825
Target:  5'- gGCCAUcCGGU-GCCcGGCUUCaaGCUGg -3'
miRNA:   3'- gUGGUGcGCCAgCGGuCCGAAG--CGAC- -5'
26715 3' -59.8 NC_005808.1 + 28669 0.66 0.400449
Target:  5'- uGCCG-GCGGccUCGCCAGcGCggCGCg- -3'
miRNA:   3'- gUGGUgCGCC--AGCGGUC-CGaaGCGac -5'
26715 3' -59.8 NC_005808.1 + 1184 0.66 0.418926
Target:  5'- uCGCCGcCGgGGUCgGCCGGGU--UGUUGg -3'
miRNA:   3'- -GUGGU-GCgCCAG-CGGUCCGaaGCGAC- -5'
26715 3' -59.8 NC_005808.1 + 13179 0.66 0.418926
Target:  5'- gGCCGCGCuGGgCGCCcuuGGCcggCGUUGu -3'
miRNA:   3'- gUGGUGCG-CCaGCGGu--CCGaa-GCGAC- -5'
26715 3' -59.8 NC_005808.1 + 39716 0.68 0.304068
Target:  5'- uCACCGCGCuGGacauccucgaacuggUCGaaCCAGGCcccUCGCUGg -3'
miRNA:   3'- -GUGGUGCG-CC---------------AGC--GGUCCGa--AGCGAC- -5'
26715 3' -59.8 NC_005808.1 + 28232 0.68 0.29299
Target:  5'- gACCACGCGcGggucggacugCGCCAGGCUcaccaugUUGCg- -3'
miRNA:   3'- gUGGUGCGC-Ca---------GCGGUCCGA-------AGCGac -5'
26715 3' -59.8 NC_005808.1 + 25621 0.72 0.152547
Target:  5'- gGCgGCGCGGUCGCCAG-CagCGCg- -3'
miRNA:   3'- gUGgUGCGCCAGCGGUCcGaaGCGac -5'
26715 3' -59.8 NC_005808.1 + 31309 0.72 0.156764
Target:  5'- gACCGCGUGGUgGCCcGGCUggaaucccaggUCGCg- -3'
miRNA:   3'- gUGGUGCGCCAgCGGuCCGA-----------AGCGac -5'
26715 3' -59.8 NC_005808.1 + 8996 0.72 0.161087
Target:  5'- uCGCCGCGCGGgggCGCuuccagCAGGCggCGCa- -3'
miRNA:   3'- -GUGGUGCGCCa--GCG------GUCCGaaGCGac -5'
26715 3' -59.8 NC_005808.1 + 38897 0.71 0.189338
Target:  5'- gCGCCGCauggggcaGCGcGUCGCCGGGUggaUUCGCa- -3'
miRNA:   3'- -GUGGUG--------CGC-CAGCGGUCCG---AAGCGac -5'
26715 3' -59.8 NC_005808.1 + 24544 0.71 0.199683
Target:  5'- gACCGCGUGGUCGCgCAGcGCggCGaUGg -3'
miRNA:   3'- gUGGUGCGCCAGCG-GUC-CGaaGCgAC- -5'
26715 3' -59.8 NC_005808.1 + 22125 0.69 0.239829
Target:  5'- aGCgCGcCGCGGUCGaaCAGGCUUUGCa- -3'
miRNA:   3'- gUG-GU-GCGCCAGCg-GUCCGAAGCGac -5'
26715 3' -59.8 NC_005808.1 + 16425 0.69 0.252477
Target:  5'- gGCCGCGgGGuaaUCGCC-GGCggCGUUGa -3'
miRNA:   3'- gUGGUGCgCC---AGCGGuCCGaaGCGAC- -5'
26715 3' -59.8 NC_005808.1 + 3864 0.69 0.259005
Target:  5'- gUACCAgGCGccGUCGCUguAGGCcgCGCUGc -3'
miRNA:   3'- -GUGGUgCGC--CAGCGG--UCCGaaGCGAC- -5'
26715 3' -59.8 NC_005808.1 + 1748 0.66 0.418926
Target:  5'- aCACCGgGCGGUCaugGCC-GGCcugCGcCUGg -3'
miRNA:   3'- -GUGGUgCGCCAG---CGGuCCGaa-GC-GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.