miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26715 5' -52.4 NC_005808.1 + 18147 0.66 0.82052
Target:  5'- cGUCGGCGucAAUGUCGCcgaggccgCGCgCGGCa -3'
miRNA:   3'- -CAGUUGC--UUAUAGUGca------GCGgGCCGa -5'
26715 5' -52.4 NC_005808.1 + 14405 0.66 0.82052
Target:  5'- -gUAGCGAAgcuggGCGUCGCCaGGCg -3'
miRNA:   3'- caGUUGCUUauag-UGCAGCGGgCCGa -5'
26715 5' -52.4 NC_005808.1 + 31294 0.66 0.808873
Target:  5'- -gCAGCGAAgccuggcgacCGCGUggugGCCCGGCUg -3'
miRNA:   3'- caGUUGCUUaua-------GUGCAg---CGGGCCGA- -5'
26715 5' -52.4 NC_005808.1 + 14037 0.66 0.800948
Target:  5'- uGUCGuugGAAUGgagCGCGaaaGCCCGGCg -3'
miRNA:   3'- -CAGUug-CUUAUa--GUGCag-CGGGCCGa -5'
26715 5' -52.4 NC_005808.1 + 15697 0.66 0.790871
Target:  5'- aUCGACGAAgAagGCGUcCGCCUgGGCa -3'
miRNA:   3'- cAGUUGCUUaUagUGCA-GCGGG-CCGa -5'
26715 5' -52.4 NC_005808.1 + 12380 0.67 0.759617
Target:  5'- aUCGcCGAGUGcgugCGCGUgcucaaGCCCGGCg -3'
miRNA:   3'- cAGUuGCUUAUa---GUGCAg-----CGGGCCGa -5'
26715 5' -52.4 NC_005808.1 + 17740 0.67 0.749978
Target:  5'- cGUCGauaGCGggUAUCucgucacccugcaauCGUUGCCCGaGCc -3'
miRNA:   3'- -CAGU---UGCuuAUAGu--------------GCAGCGGGC-CGa -5'
26715 5' -52.4 NC_005808.1 + 23246 0.67 0.738056
Target:  5'- cUCAACGGcaAUUcCGcCGCCUGGCg -3'
miRNA:   3'- cAGUUGCUuaUAGuGCaGCGGGCCGa -5'
26715 5' -52.4 NC_005808.1 + 12599 0.67 0.738056
Target:  5'- cGUCGAUGAAUuugcgCAUGgcgccgacgCGCUCGGCa -3'
miRNA:   3'- -CAGUUGCUUAua---GUGCa--------GCGGGCCGa -5'
26715 5' -52.4 NC_005808.1 + 28047 0.67 0.727096
Target:  5'- --gGGCGggUuucucGUCGCuGUUGUCCGGCg -3'
miRNA:   3'- cagUUGCuuA-----UAGUG-CAGCGGGCCGa -5'
26715 5' -52.4 NC_005808.1 + 10001 0.67 0.727096
Target:  5'- gGUCGAa-AGUGcCGCG-CGCCCGGCc -3'
miRNA:   3'- -CAGUUgcUUAUaGUGCaGCGGGCCGa -5'
26715 5' -52.4 NC_005808.1 + 9208 0.68 0.704884
Target:  5'- cUCGGCGGcgcggcgCACGUucugcggcgCGCCCGGCg -3'
miRNA:   3'- cAGUUGCUuaua---GUGCA---------GCGGGCCGa -5'
26715 5' -52.4 NC_005808.1 + 38902 0.68 0.693656
Target:  5'- -gCAugGGGcagCGCGUCGCCgGGUg -3'
miRNA:   3'- caGUugCUUauaGUGCAGCGGgCCGa -5'
26715 5' -52.4 NC_005808.1 + 17413 0.68 0.693656
Target:  5'- uUCAGCGGcgccCACGUCGCCCuugagcaguGGCc -3'
miRNA:   3'- cAGUUGCUuauaGUGCAGCGGG---------CCGa -5'
26715 5' -52.4 NC_005808.1 + 18413 0.68 0.671021
Target:  5'- cGUCGGCGAAgGUgGCGUUGUCCGcCg -3'
miRNA:   3'- -CAGUUGCUUaUAgUGCAGCGGGCcGa -5'
26715 5' -52.4 NC_005808.1 + 1107 0.69 0.648228
Target:  5'- uGUCGcGCGGcAUGUCGCGcaUCgGCCCGGUg -3'
miRNA:   3'- -CAGU-UGCU-UAUAGUGC--AG-CGGGCCGa -5'
26715 5' -52.4 NC_005808.1 + 25179 0.7 0.595706
Target:  5'- gGUCGGCGGguugaAUGUCAUGagcacgcgcgaccgcUgGCCCGGCUu -3'
miRNA:   3'- -CAGUUGCU-----UAUAGUGC---------------AgCGGGCCGA- -5'
26715 5' -52.4 NC_005808.1 + 38526 0.73 0.416657
Target:  5'- aUCAACGAAUAcagccugugggacaUCAaGUucCGCCCGGCUg -3'
miRNA:   3'- cAGUUGCUUAU--------------AGUgCA--GCGGGCCGA- -5'
26715 5' -52.4 NC_005808.1 + 40337 0.73 0.413732
Target:  5'- cGUCAACGuggugCGCGUCgaacugccggccaagGCCCGGCg -3'
miRNA:   3'- -CAGUUGCuuauaGUGCAG---------------CGGGCCGa -5'
26715 5' -52.4 NC_005808.1 + 11337 1.07 0.001961
Target:  5'- gGUCAACGAAUAUCACGUCGCCCGGCUc -3'
miRNA:   3'- -CAGUUGCUUAUAGUGCAGCGGGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.