miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26717 3' -60.6 NC_005808.1 + 18077 0.69 0.238733
Target:  5'- cGUGcUGGGCCGCCGaa--GCcgGCGCGa -3'
miRNA:   3'- cUAC-AUCCGGCGGCgcagCGa-CGCGC- -5'
26717 3' -60.6 NC_005808.1 + 10332 0.69 0.215258
Target:  5'- ----cAGGCCGuaGcCGUCGCUGCgGCGu -3'
miRNA:   3'- cuacaUCCGGCggC-GCAGCGACG-CGC- -5'
26717 3' -60.6 NC_005808.1 + 27837 0.7 0.20428
Target:  5'- cGcgGUGGcGCCgGCCGCGcCGCUGCuCa -3'
miRNA:   3'- -CuaCAUC-CGG-CGGCGCaGCGACGcGc -5'
26717 3' -60.6 NC_005808.1 + 37720 0.7 0.183775
Target:  5'- ----gAGGCCGCCGuCGccgCGCUGgGCa -3'
miRNA:   3'- cuacaUCCGGCGGC-GCa--GCGACgCGc -5'
26717 3' -60.6 NC_005808.1 + 11153 0.71 0.169611
Target:  5'- -cUGcUGGGCCGCCuGCGcaCGUUGCGUGc -3'
miRNA:   3'- cuAC-AUCCGGCGG-CGCa-GCGACGCGC- -5'
26717 3' -60.6 NC_005808.1 + 891 0.72 0.143792
Target:  5'- ----aGGGCCGCCGCGUUGUUccagaaguugaccGCGCu -3'
miRNA:   3'- cuacaUCCGGCGGCGCAGCGA-------------CGCGc -5'
26717 3' -60.6 NC_005808.1 + 8140 0.74 0.094905
Target:  5'- -uUGUGGGCgugcgggugucggCGCUGCGUCcCUGCGCGu -3'
miRNA:   3'- cuACAUCCG-------------GCGGCGCAGcGACGCGC- -5'
26717 3' -60.6 NC_005808.1 + 16067 0.75 0.089971
Target:  5'- --cGU-GGCCGCCGCG-CGCgGCGCc -3'
miRNA:   3'- cuaCAuCCGGCGGCGCaGCGaCGCGc -5'
26717 3' -60.6 NC_005808.1 + 4348 0.75 0.087472
Target:  5'- uGAUGcuGGCCGuuGCGUUGCcggUGCGCGu -3'
miRNA:   3'- -CUACauCCGGCggCGCAGCG---ACGCGC- -5'
26717 3' -60.6 NC_005808.1 + 29573 0.81 0.03206
Target:  5'- cGAUGacgAGGCCGUCGCcacugCGCUGCGCGg -3'
miRNA:   3'- -CUACa--UCCGGCGGCGca---GCGACGCGC- -5'
26717 3' -60.6 NC_005808.1 + 9514 1.08 0.000243
Target:  5'- gGAUGUAGGCCGCCGCGUCGCUGCGCGa -3'
miRNA:   3'- -CUACAUCCGGCGGCGCAGCGACGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.