Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26717 | 5' | -55.7 | NC_005808.1 | + | 8414 | 0.68 | 0.467769 |
Target: 5'- gGCAgCGAgCAGUuCGCGGGGGCgucGCGg -3' miRNA: 3'- gCGU-GCU-GUCGuGCGCCCUUGaa-CGU- -5' |
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26717 | 5' | -55.7 | NC_005808.1 | + | 29599 | 0.69 | 0.446532 |
Target: 5'- gCGCGCGGuuugccaguugucCAGCGC-CGGGcGCUUGUg -3' miRNA: 3'- -GCGUGCU-------------GUCGUGcGCCCuUGAACGu -5' |
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26717 | 5' | -55.7 | NC_005808.1 | + | 25745 | 0.69 | 0.437596 |
Target: 5'- --gGCGGCAGCACGCuGGGcGCgcUGCu -3' miRNA: 3'- gcgUGCUGUCGUGCG-CCCuUGa-ACGu -5' |
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26717 | 5' | -55.7 | NC_005808.1 | + | 14782 | 0.7 | 0.389901 |
Target: 5'- cCGCG-GGCAGCGCGCGcGaGGACgUGCu -3' miRNA: 3'- -GCGUgCUGUCGUGCGC-C-CUUGaACGu -5' |
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26717 | 5' | -55.7 | NC_005808.1 | + | 13951 | 0.7 | 0.371798 |
Target: 5'- gGCAcCGAUcuGGCacuGCGCGGGAACUgGCc -3' miRNA: 3'- gCGU-GCUG--UCG---UGCGCCCUUGAaCGu -5' |
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26717 | 5' | -55.7 | NC_005808.1 | + | 39327 | 0.7 | 0.362965 |
Target: 5'- aGCACGGCGuuGCGCGGGAAa-UGUu -3' miRNA: 3'- gCGUGCUGUcgUGCGCCCUUgaACGu -5' |
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26717 | 5' | -55.7 | NC_005808.1 | + | 13171 | 0.7 | 0.354277 |
Target: 5'- gGCGCGACgugcgAGCGCGUGGGcAACgcGCc -3' miRNA: 3'- gCGUGCUG-----UCGUGCGCCC-UUGaaCGu -5' |
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26717 | 5' | -55.7 | NC_005808.1 | + | 491 | 0.71 | 0.345738 |
Target: 5'- uGCcuCGGCAGCAuacugcgcCGCGGcGGCUUGCAg -3' miRNA: 3'- gCGu-GCUGUCGU--------GCGCCcUUGAACGU- -5' |
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26717 | 5' | -55.7 | NC_005808.1 | + | 35976 | 0.71 | 0.337347 |
Target: 5'- gCGCGCGA-AGCugGCGGcGGACUacgccaUGCu -3' miRNA: 3'- -GCGUGCUgUCGugCGCC-CUUGA------ACGu -5' |
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26717 | 5' | -55.7 | NC_005808.1 | + | 26540 | 0.71 | 0.337347 |
Target: 5'- gCGCGCGGCGGcCACGUGcGcGAACUgGCc -3' miRNA: 3'- -GCGUGCUGUC-GUGCGC-C-CUUGAaCGu -5' |
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26717 | 5' | -55.7 | NC_005808.1 | + | 456 | 0.71 | 0.329105 |
Target: 5'- uGCGCGGcCAGCuuGCGGGcGCUgucGCGg -3' miRNA: 3'- gCGUGCU-GUCGugCGCCCuUGAa--CGU- -5' |
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26717 | 5' | -55.7 | NC_005808.1 | + | 9325 | 0.71 | 0.313071 |
Target: 5'- gCGCACGuCGGCGCgGCGGGcGGCggcauccuuUUGCAg -3' miRNA: 3'- -GCGUGCuGUCGUG-CGCCC-UUG---------AACGU- -5' |
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26717 | 5' | -55.7 | NC_005808.1 | + | 20826 | 0.74 | 0.199818 |
Target: 5'- uGCGCGAgGGCuuuccgucauCGCGGGAACUgaccgacUGCAc -3' miRNA: 3'- gCGUGCUgUCGu---------GCGCCCUUGA-------ACGU- -5' |
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26717 | 5' | -55.7 | NC_005808.1 | + | 9551 | 1.08 | 0.000701 |
Target: 5'- gCGCACGACAGCACGCGGGAACUUGCAc -3' miRNA: 3'- -GCGUGCUGUCGUGCGCCCUUGAACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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