miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26717 5' -55.7 NC_005808.1 + 393 0.66 0.608416
Target:  5'- aGCGCGGcCAGCGCGCGacuguuGAGCa-GCAc -3'
miRNA:   3'- gCGUGCU-GUCGUGCGCc-----CUUGaaCGU- -5'
26717 5' -55.7 NC_005808.1 + 41310 0.66 0.608416
Target:  5'- gGCGCGGCGGUguGgGCGGGcaucaccucgaAACUUGgGg -3'
miRNA:   3'- gCGUGCUGUCG--UgCGCCC-----------UUGAACgU- -5'
26717 5' -55.7 NC_005808.1 + 41017 0.66 0.619622
Target:  5'- cCGUGUGGCAGgACGUGGaGGACUUGa- -3'
miRNA:   3'- -GCGUGCUGUCgUGCGCC-CUUGAACgu -5'
26717 5' -55.7 NC_005808.1 + 15442 0.66 0.619622
Target:  5'- -cCGCGuGCGGCGCGUGgGGGACUucgagugaUGCGc -3'
miRNA:   3'- gcGUGC-UGUCGUGCGC-CCUUGA--------ACGU- -5'
26717 5' -55.7 NC_005808.1 + 5736 0.68 0.498977
Target:  5'- uCGCACaGAucgccCAGCGCGcCGGGcAGCgagUGCGc -3'
miRNA:   3'- -GCGUG-CU-----GUCGUGC-GCCC-UUGa--ACGU- -5'
26717 5' -55.7 NC_005808.1 + 8414 0.68 0.467769
Target:  5'- gGCAgCGAgCAGUuCGCGGGGGCgucGCGg -3'
miRNA:   3'- gCGU-GCU-GUCGuGCGCCCUUGaa-CGU- -5'
26717 5' -55.7 NC_005808.1 + 14782 0.7 0.389901
Target:  5'- cCGCG-GGCAGCGCGCGcGaGGACgUGCu -3'
miRNA:   3'- -GCGUgCUGUCGUGCGC-C-CUUGaACGu -5'
26717 5' -55.7 NC_005808.1 + 13951 0.7 0.371798
Target:  5'- gGCAcCGAUcuGGCacuGCGCGGGAACUgGCc -3'
miRNA:   3'- gCGU-GCUG--UCG---UGCGCCCUUGAaCGu -5'
26717 5' -55.7 NC_005808.1 + 39327 0.7 0.362965
Target:  5'- aGCACGGCGuuGCGCGGGAAa-UGUu -3'
miRNA:   3'- gCGUGCUGUcgUGCGCCCUUgaACGu -5'
26717 5' -55.7 NC_005808.1 + 13171 0.7 0.354277
Target:  5'- gGCGCGACgugcgAGCGCGUGGGcAACgcGCc -3'
miRNA:   3'- gCGUGCUG-----UCGUGCGCCC-UUGaaCGu -5'
26717 5' -55.7 NC_005808.1 + 35976 0.71 0.337347
Target:  5'- gCGCGCGA-AGCugGCGGcGGACUacgccaUGCu -3'
miRNA:   3'- -GCGUGCUgUCGugCGCC-CUUGA------ACGu -5'
26717 5' -55.7 NC_005808.1 + 26540 0.71 0.337347
Target:  5'- gCGCGCGGCGGcCACGUGcGcGAACUgGCc -3'
miRNA:   3'- -GCGUGCUGUC-GUGCGC-C-CUUGAaCGu -5'
26717 5' -55.7 NC_005808.1 + 9551 1.08 0.000701
Target:  5'- gCGCACGACAGCACGCGGGAACUUGCAc -3'
miRNA:   3'- -GCGUGCUGUCGUGCGCCCUUGAACGU- -5'
26717 5' -55.7 NC_005808.1 + 22043 0.66 0.630839
Target:  5'- -uCAUGAgCAGCAaGCGGGGGCgccGCAu -3'
miRNA:   3'- gcGUGCU-GUCGUgCGCCCUUGaa-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.