miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26717 5' -55.7 NC_005808.1 + 20826 0.74 0.199818
Target:  5'- uGCGCGAgGGCuuuccgucauCGCGGGAACUgaccgacUGCAc -3'
miRNA:   3'- gCGUGCUgUCGu---------GCGCCCUUGA-------ACGU- -5'
26717 5' -55.7 NC_005808.1 + 28271 0.66 0.619623
Target:  5'- gCGCACcauGACcGCGCGCuGGGACacgGCGc -3'
miRNA:   3'- -GCGUG---CUGuCGUGCGcCCUUGaa-CGU- -5'
26717 5' -55.7 NC_005808.1 + 13290 0.66 0.597232
Target:  5'- aGCGCcgauuGCAGCGCGCcGGGGCcgGCGu -3'
miRNA:   3'- gCGUGc----UGUCGUGCGcCCUUGaaCGU- -5'
26717 5' -55.7 NC_005808.1 + 39048 0.66 0.574964
Target:  5'- uGCgGCG-CGGUugGCGGGAcugcGCggugUGCGg -3'
miRNA:   3'- gCG-UGCuGUCGugCGCCCU----UGa---ACGU- -5'
26717 5' -55.7 NC_005808.1 + 17483 0.67 0.563899
Target:  5'- uGCACGaACAGCG-GCGaGAACUUGg- -3'
miRNA:   3'- gCGUGC-UGUCGUgCGCcCUUGAACgu -5'
26717 5' -55.7 NC_005808.1 + 22848 0.67 0.552891
Target:  5'- aGC-CGACAGCGCGCGcugcGAAUUggGCu -3'
miRNA:   3'- gCGuGCUGUCGUGCGCc---CUUGAa-CGu -5'
26717 5' -55.7 NC_005808.1 + 36147 0.67 0.551794
Target:  5'- uGCGCGACGGCGacgccuuCGCGGGcggugGugUcGCGa -3'
miRNA:   3'- gCGUGCUGUCGU-------GCGCCC-----UugAaCGU- -5'
26717 5' -55.7 NC_005808.1 + 24072 0.67 0.531079
Target:  5'- gCGCACaguaGCGGCgaccGCGCGGGGcACggGCAc -3'
miRNA:   3'- -GCGUGc---UGUCG----UGCGCCCU-UGaaCGU- -5'
26717 5' -55.7 NC_005808.1 + 26049 0.68 0.509587
Target:  5'- cCGCGCGGCgGGCGCGCuccaugcgcucGGcGAACUcgggGCGg -3'
miRNA:   3'- -GCGUGCUG-UCGUGCG-----------CC-CUUGAa---CGU- -5'
26717 5' -55.7 NC_005808.1 + 22533 0.68 0.498978
Target:  5'- aGCACGcGCAGCGCGCGcgugccGGugUUGUc -3'
miRNA:   3'- gCGUGC-UGUCGUGCGCc-----CUugAACGu -5'
26717 5' -55.7 NC_005808.1 + 9325 0.71 0.313071
Target:  5'- gCGCACGuCGGCGCgGCGGGcGGCggcauccuuUUGCAg -3'
miRNA:   3'- -GCGUGCuGUCGUG-CGCCC-UUG---------AACGU- -5'
26717 5' -55.7 NC_005808.1 + 456 0.71 0.329105
Target:  5'- uGCGCGGcCAGCuuGCGGGcGCUgucGCGg -3'
miRNA:   3'- gCGUGCU-GUCGugCGCCCuUGAa--CGU- -5'
26717 5' -55.7 NC_005808.1 + 491 0.71 0.345738
Target:  5'- uGCcuCGGCAGCAuacugcgcCGCGGcGGCUUGCAg -3'
miRNA:   3'- gCGu-GCUGUCGU--------GCGCCcUUGAACGU- -5'
26717 5' -55.7 NC_005808.1 + 25745 0.69 0.437596
Target:  5'- --gGCGGCAGCACGCuGGGcGCgcUGCu -3'
miRNA:   3'- gcgUGCUGUCGUGCG-CCCuUGa-ACGu -5'
26717 5' -55.7 NC_005808.1 + 29599 0.69 0.446532
Target:  5'- gCGCGCGGuuugccaguugucCAGCGC-CGGGcGCUUGUg -3'
miRNA:   3'- -GCGUGCU-------------GUCGUGcGCCCuUGAACGu -5'
26717 5' -55.7 NC_005808.1 + 4800 0.68 0.467769
Target:  5'- aCGC-CGGCuGGCGCuGCGGGAuuGCUggccgGCGa -3'
miRNA:   3'- -GCGuGCUG-UCGUG-CGCCCU--UGAa----CGU- -5'
26717 5' -55.7 NC_005808.1 + 42426 0.68 0.488468
Target:  5'- aCGC-CGGCAuucuGCGCGCGGcAGCUUGg- -3'
miRNA:   3'- -GCGuGCUGU----CGUGCGCCcUUGAACgu -5'
26717 5' -55.7 NC_005808.1 + 22043 0.66 0.630839
Target:  5'- -uCAUGAgCAGCAaGCGGGGGCgccGCAu -3'
miRNA:   3'- gcGUGCU-GUCGUgCGCCCUUGaa-CGU- -5'
26717 5' -55.7 NC_005808.1 + 26540 0.71 0.337347
Target:  5'- gCGCGCGGCGGcCACGUGcGcGAACUgGCc -3'
miRNA:   3'- -GCGUGCUGUC-GUGCGC-C-CUUGAaCGu -5'
26717 5' -55.7 NC_005808.1 + 35976 0.71 0.337347
Target:  5'- gCGCGCGA-AGCugGCGGcGGACUacgccaUGCu -3'
miRNA:   3'- -GCGUGCUgUCGugCGCC-CUUGA------ACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.