Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26718 | 5' | -55.9 | NC_005808.1 | + | 8041 | 0.73 | 0.2782 |
Target: 5'- ---cGCCGUCCUUGCCGcCGUccaugacgcgcGCCCa -3' miRNA: 3'- acuaUGGCAGGAGCGGCuGCAu----------CGGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 2203 | 0.74 | 0.232183 |
Target: 5'- gGAUGCCGacgcCCUCGUCGG-GUAGCaCCa -3' miRNA: 3'- aCUAUGGCa---GGAGCGGCUgCAUCG-GG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 28666 | 0.74 | 0.214507 |
Target: 5'- cGGUGCCGgcggCCUCGCCagcGCGgcGCgCCa -3' miRNA: 3'- aCUAUGGCa---GGAGCGGc--UGCauCG-GG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 32564 | 0.75 | 0.203919 |
Target: 5'- cGAUGCCGcUCCgacguaucaggacacCGCCGACGcugugaccaagcUGGCCCg -3' miRNA: 3'- aCUAUGGC-AGGa--------------GCGGCUGC------------AUCGGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 37157 | 0.75 | 0.203375 |
Target: 5'- cGAUACCGaCCUCGCCcACGccGCCa -3' miRNA: 3'- aCUAUGGCaGGAGCGGcUGCauCGGg -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 18367 | 0.69 | 0.463993 |
Target: 5'- --uUGCCGgcggcgagguuggCCUUGCCGAUGgcGCCg -3' miRNA: 3'- acuAUGGCa------------GGAGCGGCUGCauCGGg -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 8512 | 0.68 | 0.488398 |
Target: 5'- cGAUGCCcuugaUgUCGCCGGCGaacuuGCCCa -3' miRNA: 3'- aCUAUGGca---GgAGCGGCUGCau---CGGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 11498 | 0.68 | 0.507091 |
Target: 5'- cGAcACCGcaaagggcagcgCCUgCGCUGGCGUgaGGCCCu -3' miRNA: 3'- aCUaUGGCa-----------GGA-GCGGCUGCA--UCGGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 32638 | 0.66 | 0.628514 |
Target: 5'- cGGUcGCUGUCCUgucgaaguucggCGCCGcgaagcugcccgACGUgaAGCCCg -3' miRNA: 3'- aCUA-UGGCAGGA------------GCGGC------------UGCA--UCGGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 19271 | 0.66 | 0.62741 |
Target: 5'- cGAUGCUGgaaUCGCCGuagaacaGCGUGGUCg -3' miRNA: 3'- aCUAUGGCaggAGCGGC-------UGCAUCGGg -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 40344 | 0.66 | 0.606441 |
Target: 5'- gUGGUGCgCGUCgaacUGCCGGCcaaGGCCCg -3' miRNA: 3'- -ACUAUG-GCAGga--GCGGCUGca-UCGGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 17274 | 0.66 | 0.606441 |
Target: 5'- gGAUauuGCCGUCCacgaaGCCGGCGccgcgGGCgCg -3' miRNA: 3'- aCUA---UGGCAGGag---CGGCUGCa----UCGgG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 28878 | 0.66 | 0.606441 |
Target: 5'- -----aCGUCCUCGCUgcuGGCGUAGUUg -3' miRNA: 3'- acuaugGCAGGAGCGG---CUGCAUCGGg -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 24599 | 0.66 | 0.606441 |
Target: 5'- ---gGCgUGUCCUUGCCGGgGUAGgUCa -3' miRNA: 3'- acuaUG-GCAGGAGCGGCUgCAUCgGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 18119 | 0.67 | 0.573521 |
Target: 5'- ---cGCCGUCCgguaCGUCGAacuUGUcGCCCg -3' miRNA: 3'- acuaUGGCAGGa---GCGGCU---GCAuCGGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 35005 | 0.67 | 0.566982 |
Target: 5'- -cGUGCUGUCCaccgUCGCCGACGacuucguggacguGUCCa -3' miRNA: 3'- acUAUGGCAGG----AGCGGCUGCau-----------CGGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 16743 | 0.67 | 0.562633 |
Target: 5'- cGAcgugGCgGUCacgCUCGUgGGCGUAGCCa -3' miRNA: 3'- aCUa---UGgCAG---GAGCGgCUGCAUCGGg -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 7289 | 0.67 | 0.562633 |
Target: 5'- cGggGCCGUagugCUCGCgGAUGgcGCCg -3' miRNA: 3'- aCuaUGGCAg---GAGCGgCUGCauCGGg -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 39760 | 0.68 | 0.530338 |
Target: 5'- cUGGUGCUGg---CGCCGcugcGCGUGGCCg -3' miRNA: 3'- -ACUAUGGCaggaGCGGC----UGCAUCGGg -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 4258 | 0.68 | 0.51972 |
Target: 5'- cGGUGCCGgCCgucagCGCCGGCauggugaUGGCCg -3' miRNA: 3'- aCUAUGGCaGGa----GCGGCUGc------AUCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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