Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26718 | 5' | -55.9 | NC_005808.1 | + | 14364 | 0.68 | 0.529273 |
Target: 5'- cUGGcGCaGUCCgacccgcgcguggUCGUCGGCGUGGCCg -3' miRNA: 3'- -ACUaUGgCAGG-------------AGCGGCUGCAUCGGg -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 19487 | 0.68 | 0.51972 |
Target: 5'- cGuUACCGcUgUCGCCGugGgcGCCg -3' miRNA: 3'- aCuAUGGCaGgAGCGGCugCauCGGg -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 12858 | 0.68 | 0.51972 |
Target: 5'- cGAgGCCGagUUCuaCGGCGUGGCCg -3' miRNA: 3'- aCUaUGGCagGAGcgGCUGCAUCGGg -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 23202 | 0.68 | 0.488398 |
Target: 5'- gGAUGCUGgaaaCCUaCGCCGAaGUggacaaGGCCCu -3' miRNA: 3'- aCUAUGGCa---GGA-GCGGCUgCA------UCGGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 17903 | 0.69 | 0.478154 |
Target: 5'- cUGGcACCGauggacagCCUgggCGUgGACGUGGCCCg -3' miRNA: 3'- -ACUaUGGCa-------GGA---GCGgCUGCAUCGGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 13569 | 0.69 | 0.468017 |
Target: 5'- gGGUAUCGaCCUgGCCGaagcGCGgcGCCUg -3' miRNA: 3'- aCUAUGGCaGGAgCGGC----UGCauCGGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 27814 | 0.66 | 0.628514 |
Target: 5'- ---aGCaCGUCCUCGCgCG-CGcuGCCCg -3' miRNA: 3'- acuaUG-GCAGGAGCG-GCuGCauCGGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 34913 | 0.66 | 0.661622 |
Target: 5'- ---gGCCG-CCgaggucaaGCCGACGaccUGGCCCc -3' miRNA: 3'- acuaUGGCaGGag------CGGCUGC---AUCGGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 34605 | 0.66 | 0.661622 |
Target: 5'- ---gGCaCGUCCgaCGCCGugGUGcugcuGCCUg -3' miRNA: 3'- acuaUG-GCAGGa-GCGGCugCAU-----CGGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 23333 | 0.66 | 0.661622 |
Target: 5'- gUGGUaGCCGcgcaauucgacggCCUCGCCGccgaugaacacggugGCGU-GCCCg -3' miRNA: 3'- -ACUA-UGGCa------------GGAGCGGC---------------UGCAuCGGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 14843 | 0.66 | 0.63956 |
Target: 5'- cGAUGCCGUuggcggCCagCGCCGcACGcugGGCgCCu -3' miRNA: 3'- aCUAUGGCA------GGa-GCGGC-UGCa--UCG-GG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 8512 | 0.68 | 0.488398 |
Target: 5'- cGAUGCCcuugaUgUCGCCGGCGaacuuGCCCa -3' miRNA: 3'- aCUAUGGca---GgAGCGGCUGCau---CGGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 37157 | 0.75 | 0.203375 |
Target: 5'- cGAUACCGaCCUCGCCcACGccGCCa -3' miRNA: 3'- aCUAUGGCaGGAGCGGcUGCauCGGg -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 32564 | 0.75 | 0.203919 |
Target: 5'- cGAUGCCGcUCCgacguaucaggacacCGCCGACGcugugaccaagcUGGCCCg -3' miRNA: 3'- aCUAUGGC-AGGa--------------GCGGCUGC------------AUCGGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 28666 | 0.74 | 0.214507 |
Target: 5'- cGGUGCCGgcggCCUCGCCagcGCGgcGCgCCa -3' miRNA: 3'- aCUAUGGCa---GGAGCGGc--UGCauCG-GG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 2203 | 0.74 | 0.232183 |
Target: 5'- gGAUGCCGacgcCCUCGUCGG-GUAGCaCCa -3' miRNA: 3'- aCUAUGGCa---GGAGCGGCUgCAUCG-GG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 8041 | 0.73 | 0.2782 |
Target: 5'- ---cGCCGUCCUUGCCGcCGUccaugacgcgcGCCCa -3' miRNA: 3'- acuaUGGCAGGAGCGGCuGCAu----------CGGG- -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 16517 | 0.72 | 0.31533 |
Target: 5'- aGGUGCCGguggUCUgGCCGAUaUAGCCg -3' miRNA: 3'- aCUAUGGCa---GGAgCGGCUGcAUCGGg -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 13523 | 0.71 | 0.331197 |
Target: 5'- cGGUuuGCCGUCCgCGCCGAacUGUcGGCCg -3' miRNA: 3'- aCUA--UGGCAGGaGCGGCU--GCA-UCGGg -5' |
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26718 | 5' | -55.9 | NC_005808.1 | + | 19064 | 0.71 | 0.364666 |
Target: 5'- cGAUcaGCgUGUCCUCGCCGAgGUcacgcgauugcaGGCCg -3' miRNA: 3'- aCUA--UG-GCAGGAGCGGCUgCA------------UCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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