miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26718 5' -55.9 NC_005808.1 + 1859 0.66 0.655011
Target:  5'- ---cGCCGUCUugcagguucagcccgUgGCCGGCGcUGGCCg -3'
miRNA:   3'- acuaUGGCAGG---------------AgCGGCUGC-AUCGGg -5'
26718 5' -55.9 NC_005808.1 + 2036 0.67 0.562633
Target:  5'- -cAUACCGgccgCCUCGgCGACGauggauucaagGGCCUg -3'
miRNA:   3'- acUAUGGCa---GGAGCgGCUGCa----------UCGGG- -5'
26718 5' -55.9 NC_005808.1 + 2203 0.74 0.232183
Target:  5'- gGAUGCCGacgcCCUCGUCGG-GUAGCaCCa -3'
miRNA:   3'- aCUAUGGCa---GGAGCGGCUgCAUCG-GG- -5'
26718 5' -55.9 NC_005808.1 + 3758 0.69 0.457991
Target:  5'- cGGUGCCG-CC--GCUgGACGUAGCCUc -3'
miRNA:   3'- aCUAUGGCaGGagCGG-CUGCAUCGGG- -5'
26718 5' -55.9 NC_005808.1 + 4258 0.68 0.51972
Target:  5'- cGGUGCCGgCCgucagCGCCGGCauggugaUGGCCg -3'
miRNA:   3'- aCUAUGGCaGGa----GCGGCUGc------AUCGGg -5'
26718 5' -55.9 NC_005808.1 + 4857 0.71 0.364666
Target:  5'- aGcgGCCagcuuccaaUCCUCGCCGGCG-AGCCa -3'
miRNA:   3'- aCuaUGGc--------AGGAGCGGCUGCaUCGGg -5'
26718 5' -55.9 NC_005808.1 + 6422 0.66 0.628514
Target:  5'- cGAacUCGUCCUCGCUcGCGacaccaccGCCCg -3'
miRNA:   3'- aCUauGGCAGGAGCGGcUGCau------CGGG- -5'
26718 5' -55.9 NC_005808.1 + 6542 0.69 0.468017
Target:  5'- cGAUGCUGg---CGuuGACGUagcAGCCCg -3'
miRNA:   3'- aCUAUGGCaggaGCggCUGCA---UCGGG- -5'
26718 5' -55.9 NC_005808.1 + 7289 0.67 0.562633
Target:  5'- cGggGCCGUagugCUCGCgGAUGgcGCCg -3'
miRNA:   3'- aCuaUGGCAg---GAGCGgCUGCauCGGg -5'
26718 5' -55.9 NC_005808.1 + 8041 0.73 0.2782
Target:  5'- ---cGCCGUCCUUGCCGcCGUccaugacgcgcGCCCa -3'
miRNA:   3'- acuaUGGCAGGAGCGGCuGCAu----------CGGG- -5'
26718 5' -55.9 NC_005808.1 + 8166 0.69 0.428626
Target:  5'- aUGAUGCgGcCCaggaaggCGCUGGCGUccuGCCCg -3'
miRNA:   3'- -ACUAUGgCaGGa------GCGGCUGCAu--CGGG- -5'
26718 5' -55.9 NC_005808.1 + 8231 0.71 0.364666
Target:  5'- cGcgGCCGUgcCCUCGUCGGCGaAGUCg -3'
miRNA:   3'- aCuaUGGCA--GGAGCGGCUGCaUCGGg -5'
26718 5' -55.9 NC_005808.1 + 8512 0.68 0.488398
Target:  5'- cGAUGCCcuugaUgUCGCCGGCGaacuuGCCCa -3'
miRNA:   3'- aCUAUGGca---GgAGCGGCUGCau---CGGG- -5'
26718 5' -55.9 NC_005808.1 + 8839 1.13 0.000403
Target:  5'- uUGAUACCGUCCUCGCCGACGUAGCCCa -3'
miRNA:   3'- -ACUAUGGCAGGAGCGGCUGCAUCGGG- -5'
26718 5' -55.9 NC_005808.1 + 11498 0.68 0.507091
Target:  5'- cGAcACCGcaaagggcagcgCCUgCGCUGGCGUgaGGCCCu -3'
miRNA:   3'- aCUaUGGCa-----------GGA-GCGGCUGCA--UCGGG- -5'
26718 5' -55.9 NC_005808.1 + 11621 0.72 0.323191
Target:  5'- aGAUcguccACCGUCa-CGCCGAaGUAGUCCg -3'
miRNA:   3'- aCUA-----UGGCAGgaGCGGCUgCAUCGGG- -5'
26718 5' -55.9 NC_005808.1 + 12418 0.76 0.172945
Target:  5'- uUGAUGCCGUCCUugguggcgcUGUCGAUGUcGCCg -3'
miRNA:   3'- -ACUAUGGCAGGA---------GCGGCUGCAuCGGg -5'
26718 5' -55.9 NC_005808.1 + 12640 0.7 0.400401
Target:  5'- cUGcUGCCGUCCUuuggCGUCGGguCGUcGCCCa -3'
miRNA:   3'- -ACuAUGGCAGGA----GCGGCU--GCAuCGGG- -5'
26718 5' -55.9 NC_005808.1 + 12858 0.68 0.51972
Target:  5'- cGAgGCCGagUUCuaCGGCGUGGCCg -3'
miRNA:   3'- aCUaUGGCagGAGcgGCUGCAUCGGg -5'
26718 5' -55.9 NC_005808.1 + 13523 0.71 0.331197
Target:  5'- cGGUuuGCCGUCCgCGCCGAacUGUcGGCCg -3'
miRNA:   3'- aCUA--UGGCAGGaGCGGCU--GCA-UCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.