miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26718 5' -55.9 NC_005808.1 + 16743 0.67 0.562633
Target:  5'- cGAcgugGCgGUCacgCUCGUgGGCGUAGCCa -3'
miRNA:   3'- aCUa---UGgCAG---GAGCGgCUGCAUCGGg -5'
26718 5' -55.9 NC_005808.1 + 25426 0.69 0.438292
Target:  5'- aUGAUuuCCGUCaugCGCUGcACGaAGCCCu -3'
miRNA:   3'- -ACUAu-GGCAGga-GCGGC-UGCaUCGGG- -5'
26718 5' -55.9 NC_005808.1 + 3758 0.69 0.457991
Target:  5'- cGGUGCCG-CC--GCUgGACGUAGCCUc -3'
miRNA:   3'- aCUAUGGCaGGagCGG-CUGCAUCGGG- -5'
26718 5' -55.9 NC_005808.1 + 18367 0.69 0.463993
Target:  5'- --uUGCCGgcggcgagguuggCCUUGCCGAUGgcGCCg -3'
miRNA:   3'- acuAUGGCa------------GGAGCGGCUGCauCGGg -5'
26718 5' -55.9 NC_005808.1 + 8512 0.68 0.488398
Target:  5'- cGAUGCCcuugaUgUCGCCGGCGaacuuGCCCa -3'
miRNA:   3'- aCUAUGGca---GgAGCGGCUGCau---CGGG- -5'
26718 5' -55.9 NC_005808.1 + 11498 0.68 0.507091
Target:  5'- cGAcACCGcaaagggcagcgCCUgCGCUGGCGUgaGGCCCu -3'
miRNA:   3'- aCUaUGGCa-----------GGA-GCGGCUGCA--UCGGG- -5'
26718 5' -55.9 NC_005808.1 + 4258 0.68 0.51972
Target:  5'- cGGUGCCGgCCgucagCGCCGGCauggugaUGGCCg -3'
miRNA:   3'- aCUAUGGCaGGa----GCGGCUGc------AUCGGg -5'
26718 5' -55.9 NC_005808.1 + 39760 0.68 0.530338
Target:  5'- cUGGUGCUGg---CGCCGcugcGCGUGGCCg -3'
miRNA:   3'- -ACUAUGGCaggaGCGGC----UGCAUCGGg -5'
26718 5' -55.9 NC_005808.1 + 7289 0.67 0.562633
Target:  5'- cGggGCCGUagugCUCGCgGAUGgcGCCg -3'
miRNA:   3'- aCuaUGGCAg---GAGCGgCUGCauCGGg -5'
26718 5' -55.9 NC_005808.1 + 12640 0.7 0.400401
Target:  5'- cUGcUGCCGUCCUuuggCGUCGGguCGUcGCCCa -3'
miRNA:   3'- -ACuAUGGCAGGA----GCGGCU--GCAuCGGG- -5'
26718 5' -55.9 NC_005808.1 + 24246 0.7 0.399481
Target:  5'- cGAUGauGUCCUCGCgGcuugccaccuugaGCGUGGCgCCg -3'
miRNA:   3'- aCUAUggCAGGAGCGgC-------------UGCAUCG-GG- -5'
26718 5' -55.9 NC_005808.1 + 37725 0.71 0.364666
Target:  5'- aUGAUugCGUggCUCGCCGGCGaggauuggaagcUGGCCg -3'
miRNA:   3'- -ACUAugGCAg-GAGCGGCUGC------------AUCGGg -5'
26718 5' -55.9 NC_005808.1 + 37157 0.75 0.203375
Target:  5'- cGAUACCGaCCUCGCCcACGccGCCa -3'
miRNA:   3'- aCUAUGGCaGGAGCGGcUGCauCGGg -5'
26718 5' -55.9 NC_005808.1 + 32564 0.75 0.203919
Target:  5'- cGAUGCCGcUCCgacguaucaggacacCGCCGACGcugugaccaagcUGGCCCg -3'
miRNA:   3'- aCUAUGGC-AGGa--------------GCGGCUGC------------AUCGGG- -5'
26718 5' -55.9 NC_005808.1 + 28666 0.74 0.214507
Target:  5'- cGGUGCCGgcggCCUCGCCagcGCGgcGCgCCa -3'
miRNA:   3'- aCUAUGGCa---GGAGCGGc--UGCauCG-GG- -5'
26718 5' -55.9 NC_005808.1 + 2203 0.74 0.232183
Target:  5'- gGAUGCCGacgcCCUCGUCGG-GUAGCaCCa -3'
miRNA:   3'- aCUAUGGCa---GGAGCGGCUgCAUCG-GG- -5'
26718 5' -55.9 NC_005808.1 + 8041 0.73 0.2782
Target:  5'- ---cGCCGUCCUUGCCGcCGUccaugacgcgcGCCCa -3'
miRNA:   3'- acuaUGGCAGGAGCGGCuGCAu----------CGGG- -5'
26718 5' -55.9 NC_005808.1 + 16517 0.72 0.31533
Target:  5'- aGGUGCCGguggUCUgGCCGAUaUAGCCg -3'
miRNA:   3'- aCUAUGGCa---GGAgCGGCUGcAUCGGg -5'
26718 5' -55.9 NC_005808.1 + 13523 0.71 0.331197
Target:  5'- cGGUuuGCCGUCCgCGCCGAacUGUcGGCCg -3'
miRNA:   3'- aCUA--UGGCAGGaGCGGCU--GCA-UCGGg -5'
26718 5' -55.9 NC_005808.1 + 19064 0.71 0.364666
Target:  5'- cGAUcaGCgUGUCCUCGCCGAgGUcacgcgauugcaGGCCg -3'
miRNA:   3'- aCUA--UG-GCAGGAGCGGCUgCA------------UCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.