miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26718 5' -55.9 NC_005808.1 + 7289 0.67 0.562633
Target:  5'- cGggGCCGUagugCUCGCgGAUGgcGCCg -3'
miRNA:   3'- aCuaUGGCAg---GAGCGgCUGCauCGGg -5'
26718 5' -55.9 NC_005808.1 + 40882 0.67 0.541034
Target:  5'- uUGGa--CGcCCUCGCCGGCacgccGGCCCa -3'
miRNA:   3'- -ACUaugGCaGGAGCGGCUGca---UCGGG- -5'
26718 5' -55.9 NC_005808.1 + 39760 0.68 0.530338
Target:  5'- cUGGUGCUGg---CGCCGcugcGCGUGGCCg -3'
miRNA:   3'- -ACUAUGGCaggaGCGGC----UGCAUCGGg -5'
26718 5' -55.9 NC_005808.1 + 14364 0.68 0.529273
Target:  5'- cUGGcGCaGUCCgacccgcgcguggUCGUCGGCGUGGCCg -3'
miRNA:   3'- -ACUaUGgCAGG-------------AGCGGCUGCAUCGGg -5'
26718 5' -55.9 NC_005808.1 + 4258 0.68 0.51972
Target:  5'- cGGUGCCGgCCgucagCGCCGGCauggugaUGGCCg -3'
miRNA:   3'- aCUAUGGCaGGa----GCGGCUGc------AUCGGg -5'
26718 5' -55.9 NC_005808.1 + 19487 0.68 0.51972
Target:  5'- cGuUACCGcUgUCGCCGugGgcGCCg -3'
miRNA:   3'- aCuAUGGCaGgAGCGGCugCauCGGg -5'
26718 5' -55.9 NC_005808.1 + 12858 0.68 0.51972
Target:  5'- cGAgGCCGagUUCuaCGGCGUGGCCg -3'
miRNA:   3'- aCUaUGGCagGAGcgGCUGCAUCGGg -5'
26718 5' -55.9 NC_005808.1 + 11498 0.68 0.507091
Target:  5'- cGAcACCGcaaagggcagcgCCUgCGCUGGCGUgaGGCCCu -3'
miRNA:   3'- aCUaUGGCa-----------GGA-GCGGCUGCA--UCGGG- -5'
26718 5' -55.9 NC_005808.1 + 8512 0.68 0.488398
Target:  5'- cGAUGCCcuugaUgUCGCCGGCGaacuuGCCCa -3'
miRNA:   3'- aCUAUGGca---GgAGCGGCUGCau---CGGG- -5'
26718 5' -55.9 NC_005808.1 + 23202 0.68 0.488398
Target:  5'- gGAUGCUGgaaaCCUaCGCCGAaGUggacaaGGCCCu -3'
miRNA:   3'- aCUAUGGCa---GGA-GCGGCUgCA------UCGGG- -5'
26718 5' -55.9 NC_005808.1 + 17903 0.69 0.478154
Target:  5'- cUGGcACCGauggacagCCUgggCGUgGACGUGGCCCg -3'
miRNA:   3'- -ACUaUGGCa-------GGA---GCGgCUGCAUCGGG- -5'
26718 5' -55.9 NC_005808.1 + 21895 0.69 0.468017
Target:  5'- gGGUGcCCGUgCCUCGUCGucc-AGCCCa -3'
miRNA:   3'- aCUAU-GGCA-GGAGCGGCugcaUCGGG- -5'
26718 5' -55.9 NC_005808.1 + 13569 0.69 0.468017
Target:  5'- gGGUAUCGaCCUgGCCGaagcGCGgcGCCUg -3'
miRNA:   3'- aCUAUGGCaGGAgCGGC----UGCauCGGG- -5'
26718 5' -55.9 NC_005808.1 + 6542 0.69 0.468017
Target:  5'- cGAUGCUGg---CGuuGACGUagcAGCCCg -3'
miRNA:   3'- aCUAUGGCaggaGCggCUGCA---UCGGG- -5'
26718 5' -55.9 NC_005808.1 + 18367 0.69 0.463993
Target:  5'- --uUGCCGgcggcgagguuggCCUUGCCGAUGgcGCCg -3'
miRNA:   3'- acuAUGGCa------------GGAGCGGCUGCauCGGg -5'
26718 5' -55.9 NC_005808.1 + 3758 0.69 0.457991
Target:  5'- cGGUGCCG-CC--GCUgGACGUAGCCUc -3'
miRNA:   3'- aCUAUGGCaGGagCGG-CUGCAUCGGG- -5'
26718 5' -55.9 NC_005808.1 + 25426 0.69 0.438292
Target:  5'- aUGAUuuCCGUCaugCGCUGcACGaAGCCCu -3'
miRNA:   3'- -ACUAu-GGCAGga-GCGGC-UGCaUCGGG- -5'
26718 5' -55.9 NC_005808.1 + 8166 0.69 0.428626
Target:  5'- aUGAUGCgGcCCaggaaggCGCUGGCGUccuGCCCg -3'
miRNA:   3'- -ACUAUGgCaGGa------GCGGCUGCAu--CGGG- -5'
26718 5' -55.9 NC_005808.1 + 12640 0.7 0.400401
Target:  5'- cUGcUGCCGUCCUuuggCGUCGGguCGUcGCCCa -3'
miRNA:   3'- -ACuAUGGCAGGA----GCGGCU--GCAuCGGG- -5'
26718 5' -55.9 NC_005808.1 + 24246 0.7 0.399481
Target:  5'- cGAUGauGUCCUCGCgGcuugccaccuugaGCGUGGCgCCg -3'
miRNA:   3'- aCUAUggCAGGAGCGgC-------------UGCAUCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.