miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26719 5' -63.5 NC_005808.1 + 8277 1.08 0.000139
Target:  5'- uCGGCUUCCAGGGCCACGCUGCCGGGGc -3'
miRNA:   3'- -GCCGAAGGUCCCGGUGCGACGGCCCC- -5'
26719 5' -63.5 NC_005808.1 + 11358 0.78 0.037274
Target:  5'- cCGGCUcguagCU-GGGCCGCGC-GCCGGGGu -3'
miRNA:   3'- -GCCGAa----GGuCCCGGUGCGaCGGCCCC- -5'
26719 5' -63.5 NC_005808.1 + 10930 0.77 0.044141
Target:  5'- cCGGUUUgCAGGGCCucgggcaguuGCGCggcgacaGCCGGGGa -3'
miRNA:   3'- -GCCGAAgGUCCCGG----------UGCGa------CGGCCCC- -5'
26719 5' -63.5 NC_005808.1 + 180 0.71 0.110138
Target:  5'- cCGGUgucgCUGGGcaccGUCACGCUGCCGGGc -3'
miRNA:   3'- -GCCGaa--GGUCC----CGGUGCGACGGCCCc -5'
26719 5' -63.5 NC_005808.1 + 29016 0.71 0.126063
Target:  5'- aGGCgaCCAGGcGCCGCGCUucgGCCaGGu -3'
miRNA:   3'- gCCGaaGGUCC-CGGUGCGA---CGGcCCc -5'
26719 5' -63.5 NC_005808.1 + 8305 0.71 0.126063
Target:  5'- aGuGCagCCAGcGGUgCGCGCUGCuCGGGGa -3'
miRNA:   3'- gC-CGaaGGUC-CCG-GUGCGACG-GCCCC- -5'
26719 5' -63.5 NC_005808.1 + 14890 0.71 0.126402
Target:  5'- cCGGCUUUCAGGGUCuGCGCggcgaucugcugcugGCCGGc- -3'
miRNA:   3'- -GCCGAAGGUCCCGG-UGCGa--------------CGGCCcc -5'
26719 5' -63.5 NC_005808.1 + 36251 0.7 0.147977
Target:  5'- cCGGCcUUC-GGGCCggGCGCUuugGCUGGGGc -3'
miRNA:   3'- -GCCGaAGGuCCCGG--UGCGA---CGGCCCC- -5'
26719 5' -63.5 NC_005808.1 + 10219 0.7 0.147977
Target:  5'- uGGCUUCCu--GCUggGCgGCCGGGGc -3'
miRNA:   3'- gCCGAAGGuccCGGugCGaCGGCCCC- -5'
26719 5' -63.5 NC_005808.1 + 35419 0.69 0.156022
Target:  5'- cCGGCUgcgUCAGGGCgucaGCGCgucggGCCuGGGc -3'
miRNA:   3'- -GCCGAa--GGUCCCGg---UGCGa----CGGcCCC- -5'
26719 5' -63.5 NC_005808.1 + 17058 0.69 0.160191
Target:  5'- uCGGCUa-CGGGG--GCGCUGCCGGcGGc -3'
miRNA:   3'- -GCCGAagGUCCCggUGCGACGGCC-CC- -5'
26719 5' -63.5 NC_005808.1 + 7147 0.69 0.162741
Target:  5'- uCGGCUgcggccuggaugaCCAGGGCCggGCGCUuGUcggauuCGGGGg -3'
miRNA:   3'- -GCCGAa------------GGUCCCGG--UGCGA-CG------GCCCC- -5'
26719 5' -63.5 NC_005808.1 + 41627 0.69 0.177888
Target:  5'- aGGCggCCaAGuGGCUGCaaGCUGCCGuGGGc -3'
miRNA:   3'- gCCGaaGG-UC-CCGGUG--CGACGGC-CCC- -5'
26719 5' -63.5 NC_005808.1 + 15150 0.68 0.182576
Target:  5'- uGGCauaccagcgCCAGGGCCuGCgGCcGCCGGGc -3'
miRNA:   3'- gCCGaa-------GGUCCCGG-UG-CGaCGGCCCc -5'
26719 5' -63.5 NC_005808.1 + 4375 0.68 0.19228
Target:  5'- aGGCggaugcgcagCCAGGcGCCGuCGC-GCCGGGc -3'
miRNA:   3'- gCCGaa--------GGUCC-CGGU-GCGaCGGCCCc -5'
26719 5' -63.5 NC_005808.1 + 24575 0.68 0.202434
Target:  5'- aGGCcggCCAcggucGGGCCguccgGCGUguccuUGCCGGGGu -3'
miRNA:   3'- gCCGaa-GGU-----CCCGG-----UGCG-----ACGGCCCC- -5'
26719 5' -63.5 NC_005808.1 + 27502 0.68 0.202434
Target:  5'- cCGGCggCCucGGCCgccagcuucucgGCGCgGUCGGGGu -3'
miRNA:   3'- -GCCGaaGGucCCGG------------UGCGaCGGCCCC- -5'
26719 5' -63.5 NC_005808.1 + 24649 0.68 0.21305
Target:  5'- cCGGCgggCCAGGaugguguuGUCGCGCccGCCGcGGGc -3'
miRNA:   3'- -GCCGaa-GGUCC--------CGGUGCGa-CGGC-CCC- -5'
26719 5' -63.5 NC_005808.1 + 1461 0.67 0.218535
Target:  5'- aCGGCgcggUCGGcGGCcucCugGCagGCCGGGGu -3'
miRNA:   3'- -GCCGaa--GGUC-CCG---GugCGa-CGGCCCC- -5'
26719 5' -63.5 NC_005808.1 + 30573 0.67 0.235719
Target:  5'- gGGCaagaccucgCCGGccacGGCCGCGCUGCUGGc- -3'
miRNA:   3'- gCCGaa-------GGUC----CCGGUGCGACGGCCcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.