Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26719 | 5' | -63.5 | NC_005808.1 | + | 10930 | 0.77 | 0.044141 |
Target: 5'- cCGGUUUgCAGGGCCucgggcaguuGCGCggcgacaGCCGGGGa -3' miRNA: 3'- -GCCGAAgGUCCCGG----------UGCGa------CGGCCCC- -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 25746 | 0.66 | 0.280219 |
Target: 5'- gCGGCagCacgcuGGG-CGCGCUGCUGGGcGg -3' miRNA: 3'- -GCCGaaGgu---CCCgGUGCGACGGCCC-C- -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 678 | 0.66 | 0.280219 |
Target: 5'- aGGCcgCCuacGGCgGCGCcgGCCGGGc -3' miRNA: 3'- gCCGaaGGuc-CCGgUGCGa-CGGCCCc -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 37895 | 0.66 | 0.280219 |
Target: 5'- gGGCUaCgAGGGCgGCGUcggUGCCuuucuaccGGGGc -3' miRNA: 3'- gCCGAaGgUCCCGgUGCG---ACGG--------CCCC- -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 11584 | 0.66 | 0.26686 |
Target: 5'- -uGCcgcCCAGGGCCGCcgGCUggccGCCGGGc -3' miRNA: 3'- gcCGaa-GGUCCCGGUG--CGA----CGGCCCc -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 4611 | 0.66 | 0.26686 |
Target: 5'- aGGUcagCCAGgccaauguuGGcCCGCGCUGCCGcaGGGu -3' miRNA: 3'- gCCGaa-GGUC---------CC-GGUGCGACGGC--CCC- -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 1461 | 0.67 | 0.218535 |
Target: 5'- aCGGCgcggUCGGcGGCcucCugGCagGCCGGGGu -3' miRNA: 3'- -GCCGaa--GGUC-CCG---GugCGa-CGGCCCC- -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 24649 | 0.68 | 0.21305 |
Target: 5'- cCGGCgggCCAGGaugguguuGUCGCGCccGCCGcGGGc -3' miRNA: 3'- -GCCGaa-GGUCC--------CGGUGCGa-CGGC-CCC- -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 27502 | 0.68 | 0.202434 |
Target: 5'- cCGGCggCCucGGCCgccagcuucucgGCGCgGUCGGGGu -3' miRNA: 3'- -GCCGaaGGucCCGG------------UGCGaCGGCCCC- -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 24575 | 0.68 | 0.202434 |
Target: 5'- aGGCcggCCAcggucGGGCCguccgGCGUguccuUGCCGGGGu -3' miRNA: 3'- gCCGaa-GGU-----CCCGG-----UGCG-----ACGGCCCC- -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 36251 | 0.7 | 0.147977 |
Target: 5'- cCGGCcUUC-GGGCCggGCGCUuugGCUGGGGc -3' miRNA: 3'- -GCCGaAGGuCCCGG--UGCGA---CGGCCCC- -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 14890 | 0.71 | 0.126402 |
Target: 5'- cCGGCUUUCAGGGUCuGCGCggcgaucugcugcugGCCGGc- -3' miRNA: 3'- -GCCGAAGGUCCCGG-UGCGa--------------CGGCCcc -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 29016 | 0.71 | 0.126063 |
Target: 5'- aGGCgaCCAGGcGCCGCGCUucgGCCaGGu -3' miRNA: 3'- gCCGaaGGUCC-CGGUGCGA---CGGcCCc -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 180 | 0.71 | 0.110138 |
Target: 5'- cCGGUgucgCUGGGcaccGUCACGCUGCCGGGc -3' miRNA: 3'- -GCCGaa--GGUCC----CGGUGCGACGGCCCc -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 17058 | 0.69 | 0.160191 |
Target: 5'- uCGGCUa-CGGGG--GCGCUGCCGGcGGc -3' miRNA: 3'- -GCCGAagGUCCCggUGCGACGGCC-CC- -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 35419 | 0.69 | 0.156022 |
Target: 5'- cCGGCUgcgUCAGGGCgucaGCGCgucggGCCuGGGc -3' miRNA: 3'- -GCCGAa--GGUCCCGg---UGCGa----CGGcCCC- -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 10219 | 0.7 | 0.147977 |
Target: 5'- uGGCUUCCu--GCUggGCgGCCGGGGc -3' miRNA: 3'- gCCGAAGGuccCGGugCGaCGGCCCC- -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 8305 | 0.71 | 0.126063 |
Target: 5'- aGuGCagCCAGcGGUgCGCGCUGCuCGGGGa -3' miRNA: 3'- gC-CGaaGGUC-CCG-GUGCGACG-GCCCC- -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 11358 | 0.78 | 0.037274 |
Target: 5'- cCGGCUcguagCU-GGGCCGCGC-GCCGGGGu -3' miRNA: 3'- -GCCGAa----GGuCCCGGUGCGaCGGCCCC- -5' |
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26719 | 5' | -63.5 | NC_005808.1 | + | 14192 | 0.66 | 0.273474 |
Target: 5'- aGGCaUCUAcuGGcGCCGCGCcGCCGGc- -3' miRNA: 3'- gCCGaAGGU--CC-CGGUGCGaCGGCCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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