miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 42217 0.67 0.342557
Target:  5'- cGCUGGCCGcGCucaaUCGGCa--GGCCa -3'
miRNA:   3'- cCGGCCGGU-CGuca-AGCCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 41573 0.67 0.367539
Target:  5'- cGCCGGCCguggccuuccAGguGUUCGacGCUgCGGUg -3'
miRNA:   3'- cCGGCCGG----------UCguCAAGC--CGAaGCCGg -5'
26720 3' -60 NC_005808.1 + 40733 0.68 0.314228
Target:  5'- cGCCGGCCAcgggcugaaccuGCAagacggCGGCaacauccuggcuuucUUCGGCCa -3'
miRNA:   3'- cCGGCCGGU------------CGUcaa---GCCG---------------AAGCCGG- -5'
26720 3' -60 NC_005808.1 + 39771 0.67 0.332119
Target:  5'- uGGCCuuuccucaauagguGGUCAGcCGGUUCuguccuGCUUCGGCg -3'
miRNA:   3'- -CCGG--------------CCGGUC-GUCAAGc-----CGAAGCCGg -5'
26720 3' -60 NC_005808.1 + 39050 0.69 0.261656
Target:  5'- cGGCgCGGUUGGCGGgacugcgCGGUgugCGGCUg -3'
miRNA:   3'- -CCG-GCCGGUCGUCaa-----GCCGaa-GCCGG- -5'
26720 3' -60 NC_005808.1 + 38436 0.71 0.181968
Target:  5'- cGGCCGGCUAcCAGaUCGuGCUgUCGGUa -3'
miRNA:   3'- -CCGGCCGGUcGUCaAGC-CGA-AGCCGg -5'
26720 3' -60 NC_005808.1 + 38007 0.68 0.318824
Target:  5'- aGGCCGagcaguuccucGCCuggcgcaccgAGCAGcgccUCGGCgacuUCGGCCu -3'
miRNA:   3'- -CCGGC-----------CGG----------UCGUCa---AGCCGa---AGCCGG- -5'
26720 3' -60 NC_005808.1 + 36374 0.67 0.334507
Target:  5'- aGGCCcuGGCCGaaggcaaaacGCAGaacccggCGGCUaUCGGCUu -3'
miRNA:   3'- -CCGG--CCGGU----------CGUCaa-----GCCGA-AGCCGG- -5'
26720 3' -60 NC_005808.1 + 36252 0.67 0.376141
Target:  5'- cGGCCuucgGGCCgGGCGcUUUGGCUggGGCg -3'
miRNA:   3'- -CCGG----CCGG-UCGUcAAGCCGAagCCGg -5'
26720 3' -60 NC_005808.1 + 36214 0.66 0.430514
Target:  5'- gGGCCGGCCGGCcug-CGcCUgauugccgacgUgGGCCg -3'
miRNA:   3'- -CCGGCCGGUCGucaaGCcGA-----------AgCCGG- -5'
26720 3' -60 NC_005808.1 + 35326 0.67 0.342557
Target:  5'- cGGCCccgaGGCCaagcAGCAGUUCaagacCUgggCGGCCg -3'
miRNA:   3'- -CCGG----CCGG----UCGUCAAGcc---GAa--GCCGG- -5'
26720 3' -60 NC_005808.1 + 35181 0.72 0.154919
Target:  5'- uGGCCGGCCAucCGGUgccCGGCUUCaagcugguggaaGGUCg -3'
miRNA:   3'- -CCGGCCGGUc-GUCAa--GCCGAAG------------CCGG- -5'
26720 3' -60 NC_005808.1 + 34873 0.76 0.084054
Target:  5'- aGCCGGCCGccgagcgugcgcuGCAGUucaUCGGCaagcCGGCCg -3'
miRNA:   3'- cCGGCCGGU-------------CGUCA---AGCCGaa--GCCGG- -5'
26720 3' -60 NC_005808.1 + 34487 0.69 0.26832
Target:  5'- cGCCGGCCGcGCGGUgcagGGCcucaaacgcuuUUgGGCCu -3'
miRNA:   3'- cCGGCCGGU-CGUCAag--CCG-----------AAgCCGG- -5'
26720 3' -60 NC_005808.1 + 34204 0.67 0.334507
Target:  5'- uGGCCGacuggcuacgcaGCCAGCgcgAGgcCGGgUUCGaGCCg -3'
miRNA:   3'- -CCGGC------------CGGUCG---UCaaGCCgAAGC-CGG- -5'
26720 3' -60 NC_005808.1 + 33779 0.73 0.130843
Target:  5'- cGGCUGGCCcgacccAGCAGaUCGGUacugaccggcgCGGCCg -3'
miRNA:   3'- -CCGGCCGG------UCGUCaAGCCGaa---------GCCGG- -5'
26720 3' -60 NC_005808.1 + 33647 0.66 0.402746
Target:  5'- cGGCaCGGCCAccGCuGgcgaaucCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33605 0.69 0.261656
Target:  5'- cGGCaCGGCCAccGCugg-CGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGucaaGCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33557 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33485 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.