miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 33437 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33389 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33341 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33293 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33245 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33197 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 32937 0.68 0.326595
Target:  5'- cGGCCuuuuCCAGCGGUUCcGCgcgUGGCUg -3'
miRNA:   3'- -CCGGcc--GGUCGUCAAGcCGaa-GCCGG- -5'
26720 3' -60 NC_005808.1 + 32916 0.77 0.069146
Target:  5'- cGGCCacGGCCuGCAcggCGGCUguUCGGCCa -3'
miRNA:   3'- -CCGG--CCGGuCGUcaaGCCGA--AGCCGG- -5'
26720 3' -60 NC_005808.1 + 32824 0.66 0.411876
Target:  5'- cGGUCGGacuacaCCAGCcGcaaCGGCUUCgccuGGCCg -3'
miRNA:   3'- -CCGGCC------GGUCGuCaa-GCCGAAG----CCGG- -5'
26720 3' -60 NC_005808.1 + 32260 0.66 0.402746
Target:  5'- aGGCacacGCC-GCAGcgaCGGCUaCGGCCu -3'
miRNA:   3'- -CCGgc--CGGuCGUCaa-GCCGAaGCCGG- -5'
26720 3' -60 NC_005808.1 + 32085 0.75 0.102281
Target:  5'- uGGCCGGCgguCAGCAGUUCGaucaagaGCa-CGGCCc -3'
miRNA:   3'- -CCGGCCG---GUCGUCAAGC-------CGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 31622 0.67 0.367539
Target:  5'- cGGCCuGGCCGaacagguggccGCAGUgucccCGGCUgucGCCg -3'
miRNA:   3'- -CCGG-CCGGU-----------CGUCAa----GCCGAagcCGG- -5'
26720 3' -60 NC_005808.1 + 31013 0.68 0.296347
Target:  5'- cGGCCaGCCGGCGGcccugggCGGCa-UGGCUu -3'
miRNA:   3'- -CCGGcCGGUCGUCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 30143 0.66 0.393746
Target:  5'- cGCCGGCCuGCAccgcgUCGGacaucagCGGCa -3'
miRNA:   3'- cCGGCCGGuCGUca---AGCCgaa----GCCGg -5'
26720 3' -60 NC_005808.1 + 29738 0.68 0.318824
Target:  5'- -aUCGGCCAcGCcGUagaacUCGGCcUCGGCUg -3'
miRNA:   3'- ccGGCCGGU-CGuCA-----AGCCGaAGCCGG- -5'
26720 3' -60 NC_005808.1 + 29417 0.66 0.393746
Target:  5'- cGCCGGCCAagggcgccCAGcgCGGCcgacacUGGCCg -3'
miRNA:   3'- cCGGCCGGUc-------GUCaaGCCGaa----GCCGG- -5'
26720 3' -60 NC_005808.1 + 29263 0.68 0.318824
Target:  5'- aGGCCGGCCGGUgucGGggUGGacgUGGUa -3'
miRNA:   3'- -CCGGCCGGUCG---UCaaGCCgaaGCCGg -5'
26720 3' -60 NC_005808.1 + 29066 0.72 0.167956
Target:  5'- aGG-CGGCCGaCAGUUCGGCgcggaCGGCa -3'
miRNA:   3'- -CCgGCCGGUcGUCAAGCCGaa---GCCGg -5'
26720 3' -60 NC_005808.1 + 28635 0.79 0.047687
Target:  5'- aGGCCGGCCAguuccgcgcGCAGUgccagaUCGGUgccggCGGCCu -3'
miRNA:   3'- -CCGGCCGGU---------CGUCA------AGCCGaa---GCCGG- -5'
26720 3' -60 NC_005808.1 + 28557 0.73 0.146743
Target:  5'- cGGCC-GCCGGCcaucgCGGCgcgcacgUCGGCCa -3'
miRNA:   3'- -CCGGcCGGUCGucaa-GCCGa------AGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.