Results 21 - 40 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26720 | 3' | -60 | NC_005808.1 | + | 6181 | 0.7 | 0.244961 |
Target: 5'- aGGCCGGUCuugccgcagcguuuGCAGgugaCGGCgcgCGGCUc -3' miRNA: 3'- -CCGGCCGGu-------------CGUCaa--GCCGaa-GCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 6395 | 0.76 | 0.086698 |
Target: 5'- aGGCCGGCCGGCc---CGGUguagucgCGGCCc -3' miRNA: 3'- -CCGGCCGGUCGucaaGCCGaa-----GCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 6506 | 0.66 | 0.421133 |
Target: 5'- uGGuuGGCgAGCAGUuucUUGGCgaguuuUUCGGg- -3' miRNA: 3'- -CCggCCGgUCGUCA---AGCCG------AAGCCgg -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 6802 | 0.66 | 0.405472 |
Target: 5'- cGCCuGGUCAGCcagggacacggcgcgGGUuucgucguugcccUCGGCgaCGGCCu -3' miRNA: 3'- cCGG-CCGGUCG---------------UCA-------------AGCCGaaGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 7265 | 0.75 | 0.108439 |
Target: 5'- cGCCGGCCuuguGCAGcuucUCGGCggUGGUCg -3' miRNA: 3'- cCGGCCGGu---CGUCa---AGCCGaaGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 7432 | 1.12 | 0.000139 |
Target: 5'- uGGCCGGCCAGCAGUUCGGCUUCGGCCu -3' miRNA: 3'- -CCGGCCGGUCGUCAAGCCGAAGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 7706 | 0.68 | 0.309682 |
Target: 5'- cGGCCGGCUugccgaugaacuGCAGcgcacgcUCGGCggcCGGCUu -3' miRNA: 3'- -CCGGCCGGu-----------CGUCa------AGCCGaa-GCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 7858 | 0.87 | 0.012529 |
Target: 5'- aGGCgGGCUucGCGGUUCaGGCUUCGGCCg -3' miRNA: 3'- -CCGgCCGGu-CGUCAAG-CCGAAGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 8236 | 0.69 | 0.255128 |
Target: 5'- cGGCC-GUCAGCAGcUUGcGCUUcaagCGGCCc -3' miRNA: 3'- -CCGGcCGGUCGUCaAGC-CGAA----GCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 8413 | 0.66 | 0.421133 |
Target: 5'- cGGCCagGGCCGuGCGcuugUCuacggccuugaGGCUUUGGCCc -3' miRNA: 3'- -CCGG--CCGGU-CGUca--AG-----------CCGAAGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 8650 | 0.7 | 0.242473 |
Target: 5'- cGCCGGCCuucaucgcGCGG-UCGGCauugCGuGCCg -3' miRNA: 3'- cCGGCCGGu-------CGUCaAGCCGaa--GC-CGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 8802 | 0.69 | 0.255128 |
Target: 5'- cGGCCGcGCCGGuCAGUaccgaUCuGCUgggUCgGGCCa -3' miRNA: 3'- -CCGGC-CGGUC-GUCA-----AGcCGA---AG-CCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 8848 | 0.75 | 0.099744 |
Target: 5'- cGCgGGCCAGCGcgUUGGCcUCGGUCg -3' miRNA: 3'- cCGgCCGGUCGUcaAGCCGaAGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 8989 | 0.69 | 0.260997 |
Target: 5'- uGGCCGugccGCCAGCGGUggccgugccggauUCGccaGCggUGGCCg -3' miRNA: 3'- -CCGGC----CGGUCGUCA-------------AGC---CGaaGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 9201 | 0.68 | 0.311192 |
Target: 5'- uGGCCuGCuCGGCGGcgCGGCgcacguucugCGGCg -3' miRNA: 3'- -CCGGcCG-GUCGUCaaGCCGaa--------GCCGg -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 9275 | 0.66 | 0.427687 |
Target: 5'- cGGUCGGcCCGGUAcacCGGCUgcgcauugacuuccUCGGCg -3' miRNA: 3'- -CCGGCC-GGUCGUcaaGCCGA--------------AGCCGg -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 9675 | 0.71 | 0.181968 |
Target: 5'- uGGCCGaacaGCCAGCcGUgcaGGCcgUGGCCg -3' miRNA: 3'- -CCGGC----CGGUCGuCAag-CCGaaGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 10074 | 0.68 | 0.311949 |
Target: 5'- uGGCCGGCaucacCAGCcugcacgggcgcggAGUUCucggccuuggauucgGGCgcaUCGGCCg -3' miRNA: 3'- -CCGGCCG-----GUCG--------------UCAAG---------------CCGa--AGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 10770 | 0.68 | 0.318824 |
Target: 5'- -uUCGGCCcGCAGUUC---UUCGGCCu -3' miRNA: 3'- ccGGCCGGuCGUCAAGccgAAGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 10836 | 0.71 | 0.191876 |
Target: 5'- cGGCuCGGUCuugagguggucgAGCAGgcccugcgUGGCUUCGGUCg -3' miRNA: 3'- -CCG-GCCGG------------UCGUCaa------GCCGAAGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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