miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 42217 0.67 0.342557
Target:  5'- cGCUGGCCGcGCucaaUCGGCa--GGCCa -3'
miRNA:   3'- cCGGCCGGU-CGuca-AGCCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 25592 0.67 0.359075
Target:  5'- cGGUcugCGGCCcaGGCAGUggcaaccaCGGCggcgCGGUCg -3'
miRNA:   3'- -CCG---GCCGG--UCGUCAa-------GCCGaa--GCCGG- -5'
26720 3' -60 NC_005808.1 + 36252 0.67 0.376141
Target:  5'- cGGCCuucgGGCCgGGCGcUUUGGCUggGGCg -3'
miRNA:   3'- -CCGG----CCGG-UCGUcAAGCCGAagCCGg -5'
26720 3' -60 NC_005808.1 + 21017 0.67 0.376141
Target:  5'- uGCCGGCUuccuucggGGUcaucuucauguuGGUgagCGGCaugUCGGCCu -3'
miRNA:   3'- cCGGCCGG--------UCG------------UCAa--GCCGa--AGCCGG- -5'
26720 3' -60 NC_005808.1 + 5266 0.67 0.367539
Target:  5'- -aCCGGCCAccguGUugauGUucgCGGCguugUCGGCCa -3'
miRNA:   3'- ccGGCCGGU----CGu---CAa--GCCGa---AGCCGG- -5'
26720 3' -60 NC_005808.1 + 4801 0.67 0.350747
Target:  5'- cGCCGGCUGGCGcugCGGgaUugcUGGCCg -3'
miRNA:   3'- cCGGCCGGUCGUcaaGCCgaA---GCCGG- -5'
26720 3' -60 NC_005808.1 + 24647 0.67 0.350747
Target:  5'- uGCCGGCgGGcCAGgaUGGUguugUCGcGCCc -3'
miRNA:   3'- cCGGCCGgUC-GUCaaGCCGa---AGC-CGG- -5'
26720 3' -60 NC_005808.1 + 4884 0.67 0.342557
Target:  5'- aGCgCGGCgaCGGCGGccUCGuuUUCGGCCa -3'
miRNA:   3'- cCG-GCCG--GUCGUCa-AGCcgAAGCCGG- -5'
26720 3' -60 NC_005808.1 + 24422 0.67 0.342557
Target:  5'- aGCCGGCCcgauuuGuCGGUgccgcgcgCGGCcUCGGCg -3'
miRNA:   3'- cCGGCCGGu-----C-GUCAa-------GCCGaAGCCGg -5'
26720 3' -60 NC_005808.1 + 18699 0.67 0.334507
Target:  5'- gGGCCucGGUCAGCAGcagcgcaUCGGUacggCGGCa -3'
miRNA:   3'- -CCGG--CCGGUCGUCa------AGCCGaa--GCCGg -5'
26720 3' -60 NC_005808.1 + 14770 0.67 0.342557
Target:  5'- cGGCCGGCgccaccgcgggCAGCGcgcgcgaggacGUgcugCGGCUgcgCGGCg -3'
miRNA:   3'- -CCGGCCG-----------GUCGU-----------CAa---GCCGAa--GCCGg -5'
26720 3' -60 NC_005808.1 + 24210 0.67 0.359075
Target:  5'- uGGCCGccaCCGGCGccaUCGGCaa-GGCCa -3'
miRNA:   3'- -CCGGCc--GGUCGUca-AGCCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 41573 0.67 0.367539
Target:  5'- cGCCGGCCguggccuuccAGguGUUCGacGCUgCGGUg -3'
miRNA:   3'- cCGGCCGG----------UCguCAAGC--CGAaGCCGg -5'
26720 3' -60 NC_005808.1 + 21692 0.67 0.364986
Target:  5'- aGGCUGggcaucgacacguuGCCGGCAG-UCGGUUccgUGGUCg -3'
miRNA:   3'- -CCGGC--------------CGGUCGUCaAGCCGAa--GCCGG- -5'
26720 3' -60 NC_005808.1 + 26065 0.67 0.342557
Target:  5'- aGG-CGGCCuGUA---CGGCUauaUCGGCCa -3'
miRNA:   3'- -CCgGCCGGuCGUcaaGCCGA---AGCCGG- -5'
26720 3' -60 NC_005808.1 + 35326 0.67 0.342557
Target:  5'- cGGCCccgaGGCCaagcAGCAGUUCaagacCUgggCGGCCg -3'
miRNA:   3'- -CCGG----CCGG----UCGUCAAGcc---GAa--GCCGG- -5'
26720 3' -60 NC_005808.1 + 11505 0.67 0.350747
Target:  5'- cGCCGGCCuGCaccgaGGUgagcagCGGCaccaGGCCc -3'
miRNA:   3'- cCGGCCGGuCG-----UCAa-----GCCGaag-CCGG- -5'
26720 3' -60 NC_005808.1 + 34204 0.67 0.334507
Target:  5'- uGGCCGacuggcuacgcaGCCAGCgcgAGgcCGGgUUCGaGCCg -3'
miRNA:   3'- -CCGGC------------CGGUCG---UCaaGCCgAAGC-CGG- -5'
26720 3' -60 NC_005808.1 + 31622 0.67 0.367539
Target:  5'- cGGCCuGGCCGaacagguggccGCAGUgucccCGGCUgucGCCg -3'
miRNA:   3'- -CCGG-CCGGU-----------CGUCAa----GCCGAagcCGG- -5'
26720 3' -60 NC_005808.1 + 39771 0.67 0.332119
Target:  5'- uGGCCuuuccucaauagguGGUCAGcCGGUUCuguccuGCUUCGGCg -3'
miRNA:   3'- -CCGG--------------CCGGUC-GUCAAGc-----CGAAGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.