miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 4801 0.67 0.350747
Target:  5'- cGCCGGCUGGCGcugCGGgaUugcUGGCCg -3'
miRNA:   3'- cCGGCCGGUCGUcaaGCCgaA---GCCGG- -5'
26720 3' -60 NC_005808.1 + 25592 0.67 0.359075
Target:  5'- cGGUcugCGGCCcaGGCAGUggcaaccaCGGCggcgCGGUCg -3'
miRNA:   3'- -CCG---GCCGG--UCGUCAa-------GCCGaa--GCCGG- -5'
26720 3' -60 NC_005808.1 + 5266 0.67 0.367539
Target:  5'- -aCCGGCCAccguGUugauGUucgCGGCguugUCGGCCa -3'
miRNA:   3'- ccGGCCGGU----CGu---CAa--GCCGa---AGCCGG- -5'
26720 3' -60 NC_005808.1 + 21017 0.67 0.376141
Target:  5'- uGCCGGCUuccuucggGGUcaucuucauguuGGUgagCGGCaugUCGGCCu -3'
miRNA:   3'- cCGGCCGG--------UCG------------UCAa--GCCGa--AGCCGG- -5'
26720 3' -60 NC_005808.1 + 33197 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33245 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33293 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33341 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 29738 0.68 0.318824
Target:  5'- -aUCGGCCAcGCcGUagaacUCGGCcUCGGCUg -3'
miRNA:   3'- ccGGCCGGU-CGuCA-----AGCCGaAGCCGG- -5'
26720 3' -60 NC_005808.1 + 33389 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33437 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 9201 0.68 0.311192
Target:  5'- uGGCCuGCuCGGCGGcgCGGCgcacguucugCGGCg -3'
miRNA:   3'- -CCGGcCG-GUCGUCaaGCCGaa--------GCCGg -5'
26720 3' -60 NC_005808.1 + 23535 0.68 0.311192
Target:  5'- aGG-CGGCgCAcGCGGUcgaUGGCcUCGGCCg -3'
miRNA:   3'- -CCgGCCG-GU-CGUCAa--GCCGaAGCCGG- -5'
26720 3' -60 NC_005808.1 + 13126 0.68 0.307428
Target:  5'- uGCCGGCCAggcgugggucguucuGCAacugcgccucgaugUCGGCcagugUCGGCCg -3'
miRNA:   3'- cCGGCCGGU---------------CGUca------------AGCCGa----AGCCGG- -5'
26720 3' -60 NC_005808.1 + 12287 0.68 0.303699
Target:  5'- uGCUGGcCCAGCGugcCGGCUaCGGCg -3'
miRNA:   3'- cCGGCC-GGUCGUcaaGCCGAaGCCGg -5'
26720 3' -60 NC_005808.1 + 18281 0.68 0.296347
Target:  5'- uGCCGGCCgucAGCGGgccggUGGCgaCGGUg -3'
miRNA:   3'- cCGGCCGG---UCGUCaa---GCCGaaGCCGg -5'
26720 3' -60 NC_005808.1 + 514 0.68 0.296347
Target:  5'- cGG-CGGCUuGCAGg-CGGUucugUUCGGCCg -3'
miRNA:   3'- -CCgGCCGGuCGUCaaGCCG----AAGCCGG- -5'
26720 3' -60 NC_005808.1 + 16652 0.68 0.289133
Target:  5'- uGCCGGCCgacgagggAGCGGacUCGGUUuuacccUCGGCa -3'
miRNA:   3'- cCGGCCGG--------UCGUCa-AGCCGA------AGCCGg -5'
26720 3' -60 NC_005808.1 + 10770 0.68 0.318824
Target:  5'- -uUCGGCCcGCAGUUC---UUCGGCCu -3'
miRNA:   3'- ccGGCCGGuCGUCAAGccgAAGCCGG- -5'
26720 3' -60 NC_005808.1 + 38007 0.68 0.318824
Target:  5'- aGGCCGagcaguuccucGCCuggcgcaccgAGCAGcgccUCGGCgacuUCGGCCu -3'
miRNA:   3'- -CCGGC-----------CGG----------UCGUCa---AGCCGa---AGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.